RNA id: XM_039796654.1


Basic Information

Item Value
RNA id XM_039796654.1
length 3219
RNA type mRNA
GC content 0.48
exon number 18
gene id pxk
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 30000938 ~ 30034930 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGCCTGTTGACGTCCGATCAACGGAGAACGGAACGGCGCTTCTTCCTGGTTACGAAAGCTAAAAGGTACCAGCTACTATAGTCTGCTTCTCCCGGGCTGTTGGTGTTCCTCCTGTGATCAGCGGGGCTCCGCCCAAGTGTGCTCCCCCCCAAGTGTGCTCCCCGGCGGCTTCAGCCAGTGACAGACGGACGCTCGCATCAGACTTCCACCGTTGATCCTCCCGGGATGTCTTTCCTGGAGAAGCCGGCCCCCGGCAGGCTGCTGCTGGATGACACCGTGCCCCTGACGGCGGTGATCGAAGCCAGCCAGAACCTGCAGTCCCACACGGAGTACATCGTCCGAGTCCAGAGGGGCGTGTCTTCAGAAAACAGCTGGCAGGTGATCCGGCGTTACAGTGACTTTGATGTTCTCAACAGCAGCCTGATGgTTTGTGGCATCAgtctccctcttcctccaaaGAAGCTAATTGGAAACATGGACAGGGAGTTCattgcagagagacagagaggactgCAGGCCTTTCTGGACTCAATTACCCAGCATCCCTTGCTTTCCTGCTCCCTGACTGTCAAGAAGTTTCTGGACCCAAACAACTACTCTGCCAACTACACAGaGATCGCCCTGCAGCAGGTCTCCATGTTCTTCAGGTCGGACCTGAAGTGGGAGGTCCTGGAGCCTCTCAAAGACATCGgCTGGAGGATCAGGAAGAAATACTTTTTAATCAAAAATAAAGAGCAGCCCAAGGAGATGTATCTGCTGAGCTGGGTGGACCTTGGTCCTGATAAGTTCCTGCCCGACAAAGACCTGCAGTCAGTCATGAAACTCCTAACCAGCCTCTCAACTCCATATCTCTGTCCGCTGTTGTTCTCCAGCACCAGCGAGTCTTCAGCTCTGCTCATCCGGCCGTTCACTGAGAAAGGCTCTCTGAGAGACCACATCTGTAAgGTGAAGCCCAGAGAGAGTTACCTGAAGAAGTACTGTAACCCGAAGAAGAGTCAGGGTCTCGAACTGCAGCACATCAAACTGTACGGCCGTCAGATCCTGGAGggccTGAAGCTCCTCCATGACGGCGGATTATTTTACGGTCACCTGCATGCGTCCAACATAATTGTGGATGACGGCGTGTGTCGACTGATGGACGTAGAAAACGGCATGCTGGGAGTTCCATCGGCACTGCGACCCGCCTTCACCCAGCTCAGGAAGATCAACACCACAGAGAGCATCGACATCTTCTGCTTTGGACATTTACTGTACGAGATGACGTACGGCCGACCGCCGGACAGCGTCCCGGTCGATCAATACGCCGATGTCCCCTATGCCGCTGTGGCATCCGTGCTGCAGTCCATTCTGTCCACAGAAGCCTGTAAGAGCGGGATGCCAACTGTGTTGGAGCTCATCAAGACACCTCTGTTTAGTGACGTCCAGCTCCAACACTCAGAAAAACTCCAGATCAAGGTTCCCAGCAGGCTAAAAGAGGCACTGAAGACTGCAAAGGAGAGTCTGGAGAAGAGGCTgcaggaggagcagagagtgCTCCACCAGCACAGGAGGCTAACCAGAGCTCAGTCTCACCACGGCtcagaagaggagaggaagagaaggaagatTCTGGCGAGGAAGAAGTCCAGACAGTCAGCTTTTGAAAATGAAGAAGATGTCACTGTCAGAAACAACAATAACTCTGgTTCTGGAGCCAGTTCCCCTCCAACATGcccctcctcccccaccccTCCAGCCACTacaggtagagactcagccaaaggcgggactctggcacaaccacctccgATTGGCCAACACTACGTTACTGTTAACCCtatccttgactgggttacaggtgcgtAGCATCGGcgacagcgacacaggatattaaatcTGTTTCAAACCCTTTTGAACCTGTCAttttttgtcctctgtcactaacagacaagttcgcaaactctCATTTGAAGCACCAAAATTGAggggcttgagcccccctaaaaagggtctaaagtCGCCAATGCTAACAACGCATTGTCTGCAAAACGTGTACACTGTCGGCATCATGTTGTGGTGACACATCTCCGCTTAAAATCCGCTGCTCGTGACCAAAACAGCGGagttacagtttaaaaaaacgctGCCTGTGGAAACCCAGCGTTGGGTAGGCCTACATGAACTGATGGTGGATTGAGACACTGATCTGCAGGTGCTGGTTTCACAGAGAGAAACGCTTTCTGGAAAATCTGGAAAACCTATGGAACACACAATTAACAGTTTTTAATAAAACTGGTGGTAGCACTTTTATCAAGTCACCCTTTATTAAAGGTTCATAGGTTGCAAGGAACAGCTTCGGTAATACATATTTCACTACTGCTTTATGAATCGGTTAGAAGCCATTCATTACAAAAGATGTCTTCAAAGTGTAAAGCTCAGTGTGACTTGCACTTCCTGAGGATAGCATTATCTCCAGAACATGACATTTTAAAGGTCAAAAAAATCCCTTTATCCTCACATCACGCCTAacttctttttgtctctttcgTGCTCTTCAATTCACCACGAAGACACCTCCAATGGATCACTGCATCAATTCCCTTCTTGAAAAGAGCTTCAGTGCATTTGAATTaggacagaaacacattttattaaCAACTTATTAACATTTATAGTTGCAGATGACTAGATAACTTTTGCTGTCGGCTCATTAGAAAAAGAGAAACCCGTGACCTTTTTTATGAATGACTTCATGAAGGACTCCATATACATACTCTATAAGTGACTGACCAATGAGGTATTTTTGAGTAAATGATCTATTAACCGTTAATAAACCATTTCTTGTGAAGGGTGCCTTCTAAGAAATATTAGTGTTGTAGTCTGTAATAAACTACTCACAGTGAACCGAAACGAGACTACTCTCCATTTTAAATCATAAGCCATAGTTGCCGTGATGTTGAGTGCCTCTTTTGGTTAAGTGTTTTGATACGGACACATTTTTCCGCCCTCTGCAATAATTGCAGTGAAAGTAGCATGGAAGTTCAATGTGACTCCTTGCCTCTCATTAAACTAGTTCAAAAGTAAAACTAAGACCATCATGAGTCCATAGGCCAGTTTATCTTTGTCTAACCAGCACCTGGGGAAACTGAATGTCAGCAGAAAACCAACGGTGTTGTTTTCTCActgttttctctttcctttcattctcttttcttttcttttttttttttcttttttt

Function

GO: NA

KEGG:

id description
K17543 PXK; PX domain-containing protein kinase-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57405 lncRNA downstream 2559 30006081 ~ 30007439 (-) True G42692
TU57404 lncRNA downstream 4078 30002658 ~ 30005920 (-) True G42691
TU57402 lncRNA downstream 12194 29997574 ~ 29997804 (-) True G42689
TU57340 lncRNA downstream 132155 29877510 ~ 29877843 (-) True G42643
XR_005638944.1 lncRNA downstream 175549 29830967 ~ 29834449 (-) True LOC120557236
TU57415 lncRNA upstream 1452 30036382 ~ 30036889 (-) False LOC120556842
TU57416 lncRNA upstream 1452 30036382 ~ 30036806 (-) False LOC120556842
TU57438 lncRNA upstream 14147 30049077 ~ 30098935 (-) False G42717
TU57437 lncRNA upstream 60404 30095334 ~ 30098935 (-) True G42717
TU57467 lncRNA upstream 103413 30138343 ~ 30139513 (-) True G42743
XM_039796657.1 mRNA downstream 19505 29981169 ~ 29990493 (-) True pdhb
XM_039797285.1 mRNA downstream 41149 29928338 ~ 29968849 (-) True kctd6a
XM_039797284.1 mRNA downstream 92551 29883718 ~ 29917447 (-) False ccdc71
XM_039797283.1 mRNA downstream 93140 29883718 ~ 29916858 (-) True ccdc71
XM_039797368.1 mRNA downstream 266034 29741793 ~ 29743964 (-) True LOC120557234
XM_039796619.1 mRNA upstream 1885 30036815 ~ 30037321 (-) True LOC120556842
XM_039798770.1 mRNA upstream 2311 30037241 ~ 30044628 (-) True rpp14
XM_039798769.1 mRNA upstream 10121 30045051 ~ 30055038 (-) True LOC120557999
XM_039796543.1 mRNA upstream 29239 30064169 ~ 30083871 (-) False lmcd1
XM_039796544.1 mRNA upstream 29239 30064169 ~ 30083871 (-) False lmcd1
XR_005638968.1 other downstream 1259765 28741798 ~ 28750233 (-) False LOC120557442
unassigned_transcript_204 other downstream 2436271 27573656 ~ 27573727 (-) True trnap-agg_2
TU56437 other downstream 3115968 26813208 ~ 26894030 (-) False G41944
TU56362 other downstream 3668806 26324917 ~ 26341192 (-) False LOC120557963
unassigned_transcript_203 other downstream 4483797 25526120 ~ 25526201 (-) True trnas-uga
TU57462 other upstream 90831 30125761 ~ 30130281 (-) False romo1
TU57583 other upstream 604041 30638971 ~ 30679015 (-) False LOC120558045
XR_005639084.1 other upstream 1351671 31386601 ~ 31386657 (-) True LOC120558256
XR_005639085.1 other upstream 1357646 31392576 ~ 31392632 (-) True LOC120558257
XR_005639072.1 other upstream 1361332 31396262 ~ 31396318 (-) True LOC120558242

Expression Profile