RNA id: XM_039797368.1


Basic Information

Item Value
RNA id XM_039797368.1
length 2019
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC120557234
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 29741793 ~ 29743964 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAACAGCTTATCATTTTGTGTTCCTGAGAGGAGACGCAcactgagacagacaggcagacagtaaTATTAATATCTTAGCACCAAAAGTATCACGTCCACTGAGAGGACAGCTGCTGCTTCACTCAGAGACAAAATGTCTTCCAGACAAGAGGAGGATCTTTCCTGTCCTGTCTGCCATGACATCTTCAAAAACCCTGTTGTCCTGTCatgtagccacagcttctgtaaagATTGTCTGCAGAAATGGTGGAGGGGGAAACAAATACGTGAGTGCCCATGCTGTAAGAGAAGATCCTCAAAGAGCGATCCGCCTCGTAATCTTGCATTAAAGAACCTGTGTGAGACCTTCCttttgaagaaagaaagaaagagaggttCAGCAGGGTCTGAgactctctgcagtctgcactctgagaaactcaaactcttctgtctggaccatcagcagccagtgtgtgtcatctgcagagattcaaaaactcaccataACCACAGATTCAGACCCATCGATGAAGCTGCACAGGATCACAAAGAGGAGCTCCAGAAATCCCTGAAGCCCTTACGGGAGAAACTGAAGCTCTTTAAAGAAGTTAAAGGAAACTGTGATCAAACAGCAGAGCACATTAACGTCCAGGCCGGACACACAGAGAAGCAGATTAGGGAGCAGTTTAAGAAGCTTCACCAATttctagaagaggaagaggaggccaggatCTGTGctctgagggaggaagagaagcagaagagtcagaggatgaaggagaagattgaggctctgagcagagagatagcagctctttcagacacagtcagagccacagaggagaggctgagagctgaagacgtCTCTTTCCTGCAGaactacaaggctgcagtggagAGAGTCCAGCGGCAGCCCCCGCTGGATGATCCACAGCTGAtctcaggagctctgatagacgTGGTTaaacacctgggcaacctgagcttcaacatctggaacaagatggAGGAGAGGGTCTCCTACACTCCTGTGATTCTGGATCCTAACACTGCTGACCCAGAACTTGTCGTGTCTGGAGATCTGACCAGTGTGAGATCTGGAGAGCGACGAGGGCTTCCAAAAAACCCGGAGAGGATCAAATTCTCCTGCTCTGTCCTGGGCTCGGAAGGCTTTAACTCAGGGACTCACAGCTGGAGCGTTGAGGTTGGAGACAACAAGGACTGGGAACTGGGCATGTTGGGCGAGTTCGTCCAGATGAACGGATGCCTTCAGTCTGGATTGTGGAGAATTTTGTTCTCTAACGGTAAATTCACAGCATTCTCCACGTCAGATCCAGAGGAAGATCTGCCGGTGAAGAAGCAGCTCCAGAGGATCAGAGTTCATCTCGACTTTGACGAAGGAAAGCTGTCTTTCTTTAATCTTGATActaacacacacttacacaccttcacacacacttttactggCACCCTGTTTCCGTACATTTACACTGAGAATCCCCTTCCACTGAAGATTTTATCAGTGAAGGTGAATCAGAGTTAGAGATTAATATGACAGGGTGACCAATATGACAATATGTACTTTGAGACGAAGTCTGTCAACtgtcacagattttttttttgggaccgTTTACCAAGGTGTCTTTTATAAATATCTCTGGTTGTACACTGTTGCATATTAGGGCAATGTTGGACTTAAAGGGTTACTGGATCAATGTGATGAATTTCAATGATTTCATTTTCACAAGTTGTGTGCTTGTTTGTCAAGGCACATATTACTAAGCTTATACAAATACTAGGATGGCAGGATATACAGTATagggaatggtgtgctatgactTTTGGTAGGAATGTGGCAAATCATTTTTGCAAAAATCACAAAGAAATTAACTTGTGTTGCATTAGAGATTTCCCAAAATCAAATAGTGTATACTGTGATTAGGGATTTTTTATACCTAACCCACACCCCAGGTAGGgatgggcaatatatcgatattatatcaatattgtgatatgagactagatttcgtcttaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57167 lncRNA downstream 343069 29398426 ~ 29398724 (-) True G42502
TU57166 lncRNA downstream 392965 29299807 ~ 29348828 (-) True G42501
XR_005639057.1 lncRNA downstream 554293 29184139 ~ 29187500 (-) True LOC120558106
TU57022 lncRNA downstream 792466 28944001 ~ 28949327 (-) False G42383
TU57277 lncRNA upstream 6265 29750229 ~ 29752056 (-) True G42585
XR_005638945.1 lncRNA upstream 54206 29798170 ~ 29802364 (-) True LOC120557237
XR_005638944.1 lncRNA upstream 87003 29830967 ~ 29834449 (-) True LOC120557236
TU57340 lncRNA upstream 133546 29877510 ~ 29877843 (-) True G42643
TU57402 lncRNA upstream 253610 29997574 ~ 29997804 (-) True G42689
XM_039797732.1 mRNA downstream 71313 29668831 ~ 29670480 (-) True wu:fb55g09
XM_039798620.1 mRNA downstream 113784 29616239 ~ 29628009 (-) False rbbp5
XM_039798619.1 mRNA downstream 113785 29616239 ~ 29628008 (-) True rbbp5
XM_039798622.1 mRNA downstream 113785 29616240 ~ 29628008 (-) False rbbp5
XM_039798621.1 mRNA downstream 113787 29616240 ~ 29628006 (-) False rbbp5
XM_039797284.1 mRNA upstream 139754 29883718 ~ 29917447 (-) False ccdc71
XM_039797283.1 mRNA upstream 139754 29883718 ~ 29916858 (-) True ccdc71
XM_039797285.1 mRNA upstream 184374 29928338 ~ 29968849 (-) True kctd6a
XM_039796657.1 mRNA upstream 237205 29981169 ~ 29990493 (-) True pdhb
XM_039796655.1 mRNA upstream 256974 30000938 ~ 30034930 (-) False pxk
XR_005638968.1 other downstream 991560 28741798 ~ 28750233 (-) False LOC120557442
unassigned_transcript_204 other downstream 2168066 27573656 ~ 27573727 (-) True trnap-agg_2
TU56437 other downstream 2847763 26813208 ~ 26894030 (-) False G41944
TU56362 other downstream 3400601 26324917 ~ 26341192 (-) False LOC120557963
unassigned_transcript_203 other downstream 4215592 25526120 ~ 25526201 (-) True trnas-uga
TU57462 other upstream 381797 30125761 ~ 30130281 (-) False romo1
TU57583 other upstream 895007 30638971 ~ 30679015 (-) False LOC120558045
XR_005639084.1 other upstream 1642637 31386601 ~ 31386657 (-) True LOC120558256
XR_005639085.1 other upstream 1648612 31392576 ~ 31392632 (-) True LOC120558257
XR_005639072.1 other upstream 1652298 31396262 ~ 31396318 (-) True LOC120558242

Expression Profile