G52441


Basic Information

Item Value
gene id G52441
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23127642 ~ 23128801 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU70001
CCGAGTGCGGCAGAAGAGAAAGTCAGAAAGTTTTGAGAGAAGGACTACCACACTGGGGTTGGTCTTTTtttaatgggatttgttgagaaaaagaaaaatatggaaTATCATTAGCCTCATCTTTTAAACTGAACATGCACAAATTGGGGATTTTTGGCTTAAAAATATGAATGTGCTGGATCTGTCCATTCATGCTCTCATGTTGACTTGATTGATAACAGTTTGAATCTATGTTCTGATAATAACTCACGTCATTAATACATTTCCTGTATCCTGAGTGTTATACTACAAAGACAACATACAAGGTAGGACAATAAGGACATATTGGTGAGTTGTGGTTTGTGCAGCAGTCGGAACAAACATAGCATACATATGCGTCAAAGTCTCAAAATAGTGTTTCCAATTTGCATGACCTCTTTCCCTGCAAGGTTTAAGTAGGACTACAAATCTTCAGAGTGGATAACATCTAATTTGTGTTGCCTGTGGTAAGATTATGGTGTAAGGAAGGGAAGACAACTTTGTGCCAtcatttaatgttaaaaaaaacaatacaacttCAGCAATGTACAGAAAGCTAGACTTGAACCTTCAGGGATGTTTTCTCTGTGCAGGAAGTAACTGATGCAACCCAAACTGTACTCCACTACAGTACTCTGTATATCAGTAACAGACTTcctatcattattattattattattattattattattgttagtagtcgtagtagtagtagtattatgtGATGGCTTCagccaatgaaaaaaaaacagcctctgGCTATTACAAAATATCCCACTTTATGTTTAATGTGTTTATATATCTTCACTGATATCCATAGGATTAAAAAATGTACCttgaaaaaaaaggatattCTATATTGACCTCCACTTATTGAATAATATTAGTCATATTCAAActctaaaactattaaaaaactCACAGGGAAATCAAGATCTCCCTTTACAAATTGAGTTGCAGTGATGTGTCTCATGTATAAAAATATTGTTCAATACAATGTTGTCTAGTtaataattaaagtgatggttcggagtaatttaccctatggtcctttgcaccatgacctcgagccaaacacccccccagaagcttttttcacctgggtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70001 True 1124 lncRNA 0.35 2 23127642 23128801

Neighbor

gene id symbol gene type direction distance location
amigo1 amigo1,LOC102784317,LOC100710046,LOC104942231 coding downstream 50473 23069659 ~ 23077169 (-)
sort1b sort1,LOC104926808,LOC103367916 coding downstream 74409 23032915 ~ 23053233 (-)
nfyal nfya coding downstream 98034 23020769 ~ 23029608 (-)
ahcyl1 ahcyl1,LOC104942237 coding downstream 107602 23002911 ~ 23020040 (-)
hspa1b LOC103368021,LOC104926754 coding downstream 125013 22999587 ~ 23002629 (-)
gnat2 LOC104926845,LOC103367853,LOC102304204 coding upstream 2486 23131287 ~ 23138382 (-)
eps8l3b NA coding upstream 48436 23177237 ~ 23187073 (-)
atp5pb atp5f1 coding upstream 58602 23187403 ~ 23192877 (-)
slc25a33 slc25a33 coding upstream 93218 23222019 ~ 23231795 (-)
spsb1 spsb1 coding upstream 116006 23244807 ~ 23254591 (-)
G52428 NA non-coding downstream 60242 23066191 ~ 23067400 (-)
G52273 LOC106572836 non-coding downstream 511590 22611894 ~ 22616052 (-)
G52244 smc5,LOC102791010 non-coding downstream 558359 22568662 ~ 22569283 (-)
G52238 NA non-coding downstream 565101 22562202 ~ 22562541 (-)
G52234 NA non-coding downstream 582169 22544034 ~ 22545473 (-)
G52451 NA non-coding upstream 41377 23170178 ~ 23172642 (-)
G52453 NA non-coding upstream 65440 23194241 ~ 23195101 (-)
G52471 NA non-coding upstream 75673 23204474 ~ 23205291 (-)
G52474 NA non-coding upstream 79036 23207837 ~ 23213937 (-)
G52477 NA non-coding upstream 107882 23236683 ~ 23237459 (-)
G52226 NA other downstream 596934 22529606 ~ 22530708 (-)
LOC120559880 LOC104932903,LOC103358260,LOC104967532,LOC107390844 other downstream 898221 22223149 ~ 22229421 (-)
si:dkey-151g10.3 wnk3 other downstream 1112599 21970052 ~ 22015043 (-)
esyt1a LOC104932417,LOC104956886,LOC103356920 other downstream 1910923 21199340 ~ 21216719 (-)
fmnl3 fmnl3 other downstream 1928599 21167904 ~ 21199043 (-)
si:ch211-150o23.3 LOC103367744,LOC101075068 other upstream 85297 23214098 ~ 23218900 (-)
G52501 eno1,LOC104965722,LOC103151087 other upstream 179699 23308500 ~ 23319684 (-)
masp2 masp2,LOC106536928,LOC103357864,LOC107086886 other upstream 1206348 24335149 ~ 24339456 (-)
phactr3a LOC100701276,LOC107550338,LOC107551495,LOC104947949,LOC103365918,LOC106955159 other upstream 1621630 24750431 ~ 24785005 (-)
acot7 acot7,LOC102782704 other upstream 2781954 25910755 ~ 25972322 (-)

Expression


Co-expression Network