G52244 (smc5,LOC102791010)


Basic Information

Item Value
gene id G52244
gene name smc5,LOC102791010
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22568662 ~ 22569283 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU69763
GCCCTCCAGCTCTTTACGGGTGGTCTCGTACTCCACCCATGGTTTCTTCTTCTCAAGTAACTCAATCATGTCCAGATGCCTCTTCTTTTCATAGTAACGGTTTAcatcatgtttgttcctctcATTCCTCTGTTTGGCCTTCTCGAGAAAACTGGACTTCTCtttcacaatgttCTCCTGTTCTCGTTCTTTGTTGCGGAAGTTTTTGAGCTCACAGTGGTACTCATACATCTCTGGTGGTCCCACTGACTTCTCAGTTGCCTCCAG

Function

symbol description
smc5 Predicted to enable ATP binding activity. Predicted to act upstream of or within double-strand break repair via homologous recombination and sister chromatid cohesion. Predicted to be located in chromosome and nucleus. Predicted to be part of Smc5-Smc6 complex. Orthologous to human SMC5 (structural maintenance of chromosomes 5).

NR:

description
PREDICTED: structural maintenance of chromosomes protein 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69763 True 267 lncRNA 0.46 3 22568662 22569283

Neighbor

gene id symbol gene type direction distance location
zgc:195245 LOC104964406,LOC106525460,LOC105931770 coding downstream 8336 22556293 ~ 22560326 (-)
inavaa LOC103368199 coding downstream 13932 22545918 ~ 22554730 (-)
LOC120559491 NA coding downstream 65811 22495620 ~ 22502851 (-)
LOC120558868 pfkm,LOC103368244 coding downstream 75730 22483283 ~ 22492932 (-)
LOC120558867 LOC103368251,LOC102792734 coding downstream 86778 22471680 ~ 22481884 (-)
c5h1orf194 NA coding upstream 12791 22582074 ~ 22584094 (-)
lhfpl5b lhfpl5,LOC102777996 coding upstream 57993 22627276 ~ 22631134 (-)
dclre1b NA coding upstream 176811 22746094 ~ 22750778 (-)
LOC120559344 NA coding upstream 259740 22829023 ~ 22832063 (-)
prok1 prok1 coding upstream 264442 22833725 ~ 22836221 (-)
G52238 NA non-coding downstream 6121 22562202 ~ 22562541 (-)
G52234 NA non-coding downstream 23189 22544034 ~ 22545473 (-)
G52233 NA non-coding downstream 24749 22543325 ~ 22543913 (-)
G52232 LOC106525430,LOC105354359 non-coding downstream 26663 22539439 ~ 22541999 (-)
G52231 NA non-coding downstream 30515 22535552 ~ 22538147 (-)
G52273 LOC106572836 non-coding upstream 42611 22611894 ~ 22616052 (-)
G52428 NA non-coding upstream 496908 23066191 ~ 23067400 (-)
G52441 NA non-coding upstream 558359 23127642 ~ 23128801 (-)
G52451 NA non-coding upstream 600895 23170178 ~ 23172642 (-)
G52453 NA non-coding upstream 624958 23194241 ~ 23195101 (-)
G52226 NA other downstream 37954 22529606 ~ 22530708 (-)
LOC120559880 LOC104932903,LOC103358260,LOC104967532,LOC107390844 other downstream 339241 22223149 ~ 22229421 (-)
si:dkey-151g10.3 wnk3 other downstream 553619 21970052 ~ 22015043 (-)
esyt1a LOC104932417,LOC104956886,LOC103356920 other downstream 1351943 21199340 ~ 21216719 (-)
fmnl3 fmnl3 other downstream 1369619 21167904 ~ 21199043 (-)
si:ch211-150o23.3 LOC103367744,LOC101075068 other upstream 644815 23214098 ~ 23218900 (-)
G52501 eno1,LOC104965722,LOC103151087 other upstream 739217 23308500 ~ 23319684 (-)
masp2 masp2,LOC106536928,LOC103357864,LOC107086886 other upstream 1765866 24335149 ~ 24339456 (-)
phactr3a LOC100701276,LOC107550338,LOC107551495,LOC104947949,LOC103365918,LOC106955159 other upstream 2181148 24750431 ~ 24785005 (-)
acot7 acot7,LOC102782704 other upstream 3341472 25910755 ~ 25972322 (-)

Expression


Co-expression Network