G52474


Basic Information

Item Value
gene id G52474
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23207837 ~ 23213937 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU70050
aaatgtattgttgcTCTTGAGTTATGTGGcgcttaaaatgtttacatATACCAACTCTTTAATATTTTTGAGTTATATAACAGCAATACAAAAAACATCACATCAAACTTCTACAGGATGTAAAGGTTGGATTATGTAGTACAAATGTGTGACATCTCTACCGAAAAAAGAACAAACCTCATTACAGCTCATAAACTGTTCAATTTCATATTTTCACATGAACTTAAACatttggtaccactttacttgaaggtatctacataagagtgacatgacactgtcatgaacacatgaactctAACCATAAGTTGTCATGACTGTTGTCAttacaaaaactgaatgacaccTAGTAAAAGAAGCgctatgtcataaacgtttgacTTGTTtgtgacacgttcatgacagtgtcatgtcactcttatgtagataccttacaGTCAAGTGTAACCAAACATTTCCCCAACTACTTAACAATGAAAACATCAATAATTACATCCCAATAATTTTACAAAACCACTGAGGCACTTTACGTATTACAGCTGGTCTGAAAACTGTCCCAGCTGTGCTGTATTAGTTATTTCTAATAACTAACAAAAGGAAGTTGTACTATTGTTGTACCCCAAGATAATGTAAACTTTGTAGGTTGCAAGATTCTTTTGGTCAATCTTCATATTAACAATATACACAGAATCATAGACTCCCCCTTATTAACAGGTACTGTaatactgagaaaaaaaaatacattggaTACTGACCTGCAGATTGATTAATACACTGTGAGTCCGGGTGTTTgaaataaagacacattttgtcCCAAAAGTTGCTCAAGATCTGGTGAAATTTCACAAGTTTTCTTGATGGAATCTCAAATTTATACAATGGTCTATGGCGTTTAATGAGAGATTAGCTGTCCAATTTTTTGATTTTGATGAAGTGTGATCTTCCCATTCAGATTGATTCACTGTGAATCGCTGAGGCTTACAGTAGATAGGAATGGCTCAGGCTCACCACAGTACAACGGAGATGACTGGCATCTTGTTTGCAGTTTGTGATGCTTCATGTGCCAAACAAAACTCAGTCAACATCAAAATGTCTCTTTCTTAATATGAGACATCTTGTGATAATCTACTGACCTTAATTTGTTGACATCAAGATCTGTGTATATTTACTCTGCAACTGTAGCATAATATTTGGAGTGAGTTTTAAATGCAATTTCTTGACCTATTCGGTAGTGCAAGCCAAACACCGGTGGGTGCACTGTGCTGTGGAGGAGCGGTTGATGATGATCTCCAAAACTTTCAACAGATCACAATGAAACCAGGTAATAGGAAGAAGGATTCTGTGTAATTTTGAGTGATATAACCCTTTAAAATGGCATCTATTCTAGCAGTGAAGCTGGGTGACAGTTTAACCTATAAacaaaagaaagcaaataaactGCAATTATAAAGCAAAGAAATATTGCATAAAGCCCAAATCAGCAATGTCTAAAATAAAGGCATTAACCAAAACACATTCATTCAATGAAAATGCACAATAAAGTATAATATCCTTTTAAAACTGAGCATGAATTAAAATCAGAGAAAATCATTCTATTCCTTTGAGGGATTCATTTGTCTCCATACTGGAAAAAACTAAGTAGAGGAAGACTGCCACAGCCAGGAAGAACGCAAACTGAACCCACAATGGGATGAGGCGAGACGACTTTGGTGCCTTTGGAGCATCTTGAGATTTCATGGGCGTCGAGTTCAAATAGGAGTTTCTGTAAGTGGACGGCGTGTCGTACATGGCGGGCCTGAAATGGAATTAAGTGTTTGAGCTGTTAGTTTCGGTGGCCAAAAACAGAGCAACAACAACTCCTCCCATCGATAAAAAGCGGGAGCTCGTTTCGTCGCGCGGGCGGTAAGGACGGTCCTCTCTGAAGTCGAGTCGAACGGGAGAGAGTAAACCCCGCCCTCCTTTGTTGACCCGAGTGTTGAAAACATTTGCGCTTTCCGTCAATGGTACATCATTTCCGTTTTCCTTCTTCAATGGTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70050 True 2037 lncRNA 0.38 2 23207837 23213937

Neighbor

gene id symbol gene type direction distance location
atp5pb atp5f1 coding downstream 14960 23187403 ~ 23192877 (-)
eps8l3b NA coding downstream 20764 23177237 ~ 23187073 (-)
gnat2 LOC104926845,LOC103367853,LOC102304204 coding downstream 69455 23131287 ~ 23138382 (-)
amigo1 amigo1,LOC102784317,LOC100710046,LOC104942231 coding downstream 130668 23069659 ~ 23077169 (-)
sort1b sort1,LOC104926808,LOC103367916 coding downstream 154604 23032915 ~ 23053233 (-)
slc25a33 slc25a33 coding upstream 8082 23222019 ~ 23231795 (-)
spsb1 spsb1 coding upstream 30870 23244807 ~ 23254591 (-)
LOC120559643 NA coding upstream 45534 23259471 ~ 23261385 (-)
ca6 ca6,LOC102780476 coding upstream 79266 23293203 ~ 23299690 (-)
noc2l noc2l coding upstream 344960 23558897 ~ 23588252 (-)
G52471 NA non-coding downstream 2546 23204474 ~ 23205291 (-)
G52453 NA non-coding downstream 12736 23194241 ~ 23195101 (-)
G52451 NA non-coding downstream 35195 23170178 ~ 23172642 (-)
G52441 NA non-coding downstream 79036 23127642 ~ 23128801 (-)
G52428 NA non-coding downstream 140437 23066191 ~ 23067400 (-)
G52477 NA non-coding upstream 22746 23236683 ~ 23237459 (-)
G52544 NA non-coding upstream 234149 23448086 ~ 23448625 (-)
G52574 NA non-coding upstream 488791 23702728 ~ 23702955 (-)
G52630 NA non-coding upstream 575511 23789448 ~ 23791103 (-)
G52633 NA non-coding upstream 594734 23808671 ~ 23809079 (-)
G52226 NA other downstream 677129 22529606 ~ 22530708 (-)
LOC120559880 LOC104932903,LOC103358260,LOC104967532,LOC107390844 other downstream 978416 22223149 ~ 22229421 (-)
si:dkey-151g10.3 wnk3 other downstream 1192794 21970052 ~ 22015043 (-)
esyt1a LOC104932417,LOC104956886,LOC103356920 other downstream 1991118 21199340 ~ 21216719 (-)
fmnl3 fmnl3 other downstream 2008794 21167904 ~ 21199043 (-)
si:ch211-150o23.3 LOC103367744,LOC101075068 other upstream 161 23214098 ~ 23218900 (-)
G52501 eno1,LOC104965722,LOC103151087 other upstream 94563 23308500 ~ 23319684 (-)
masp2 masp2,LOC106536928,LOC103357864,LOC107086886 other upstream 1121212 24335149 ~ 24339456 (-)
phactr3a LOC100701276,LOC107550338,LOC107551495,LOC104947949,LOC103365918,LOC106955159 other upstream 1536494 24750431 ~ 24785005 (-)
acot7 acot7,LOC102782704 other upstream 2696818 25910755 ~ 25972322 (-)

Expression


Co-expression Network