LOC120559407


Basic Information

Item Value
gene id LOC120559407
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 2329654 ~ 2335701 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801105.1
CCCAGCCATGTCTATATGACAGTTGCCGTTGCACATTTAAAACTCAGAGTGCCCTTCGCACACATTTGTCCAGAGATGGAGGCAAAGCTCAGAGTAATCCTTAATGACAGAGTTGAGAAGTTGGTCCTTCCATCAGGAATCCCACCCACTGTGGAGGAGCTGCAAACTGTTGTGAAGGAGACCTTTGGAATTTCTGATGAGTTCAGTCTTCAGTATTTGGACTCAGAATTTGAAGATTACTTTACTCTTCATACAAGTGACCAAATTAAACACAAAGACACCATAAAGATTGTTCACACTGCCCCAATTATCCTCAACTTGCTCCCACTTGATGAAAGTTTGGGCAGTTCCTTTGATCAACAGTCAACAGACTGTGACTCTGCATCTTATGCAGACTCATCTGCTGGAACGTCTTCTTCACAGGACACCATTTTCCTGTCTAGGCGAAATACTACAGAACGATGTCAAGGGTGGCCAAAGCAGTTCCCCATTCCAGGGTTTGCATATGAAACTGAGATGTACCTTGAAAGAGCCACTGAAGACTACAAGAAGAATGGAACACTTGTGACTACCTCAAAGATCAAGACAGACATACTTGAGAAGCTGGCTGaaactacagtgccttgcgaaagtattcggcccccttgaacttttcgaccttttgcca
>XR_005639246.1
TACTTGAGAAAGATCACCTGTGGTTGAAACAATTGTGGTACTATGAATGCCCATAAAGTACAAGACAGAGGTGTGCCACCTTTTCTAGTATGCCAGGTTCAGCTCCTTGTGGTTACACATTTtcactttgtttgtttgcttgtgtgttttgtatgttcCTGACAGAAATGTGCATGATCATTTTCCAAACCTGTTACCTCAGTGACAATGATTTTTGTCATCTGTGGACAAACAAGTGTAAAATGTTGGTGTTTGTTTAGTTATTCCTTATATGTTATGTAAGTGTAAACTACAAACTTTTCAAATTGAATTTAAGCTCATTTGAATTTCTTTCCAGGTGCATGAAGAGTCTGACTGAAATTTGTCAACAGAGATGGAGGCAAAGCTCAGAGTAATCCTTAATGACAGAGTTGAGAAGTTGGTCCTTCCATCAGGAATCCCACCCACTGTGGAGGAGCTGCAAACTGTTGTGAAGGAGACCTTTGGAATTTCTGATGAGTTCAGTCTTCAGTATTTGGACTCAGAATTTGAAGATTACTTTACTCTTCATACAAGTGACCAAATTAAACACAAAGACACCATAAAGATTGTTCACACTGCCCCAATTATCCTCAACTTGCTCCCACTTGATGAAAGTTTGGGCAGTTCCTTTGATCAACAGTCAACAGACTGTGACTCTGCATCTTATGCAGACTCATCTGCTGGAACGTCTTCTTCACAGGACACCATTTTCCTGTCTAGGCGAAATACTACAGAACGATGTCAAGGGTGGCCAAAGCAGTTCCCCATTCCAGGGTTTGCATATGAAACTGAGATGTACCTTGAAAGAGCCACTGAAGACTACAAGAAGAATGGAACACTTGTGACTACCTCAAAGATCAAGACAGACATACTTGAGAAGCTGGCTGaaactacagtgccttgcgaaagtattcggcccccttgaacttttcgaccttttgcca
>XR_005639247.1
TACTTGAGAAAGATCACCTGTGGTTGAAACAATTGTGGTACTATGAATGCCCATAAAGTACAAGACAGAGGTGTGCCACCTTTTCTAGTATGCCAGGTTCAGCTCCTTGTGGTTACACATTTtcactttgtttgtttgcttgtgtgttttgtatgttcCTGACAGAAATGTGCATGATCATTTTCCAAACCTGTTACCTCAGTGACAATGATTTTTGTCATCTGTGGACAAACAAGTGTAAAATGTTGGTGTTTGTTTAGTTATTCCTTATATGTTATGTAAGTGTAAACTACAAACTTTTCAAATTGAATTTAAGCTCATTTGAATTTCTTTCCAGGTGCATGAAGAGTCTGACTGAAATTTGTCAACAGGTTTTGTCCGATGGGATGGCAGTGTAAG
>XR_005639248.1
tgatgtcgggCAGCCATCAtacgatgatatcgtccatcggcacaaccctatcCTGAAGAGACACTGACACCCAAACACCATTTTTTGGAACACTATCCTGGATTAATTGAAGAATATGGGCCTCTGGTTGGTGTATGGACAATGCGCTTTGAAGCAAAACACAGCTTTTTTAAGCAGGTTGTGAGGCACactaaaaacttaaaaaatgtattgttgacCCTTTCTACAAGACATCAAATGACGATGGCATACCACTTGTATACAGACATTGGAAAACAGTCAttgtgtgtaacaaaaatatctgTCGTGCCTTTAGATGTGCTGCATTCAGACATACAGGAAGCTTTAAGAAAAACATCACCGCATCTGTGCACTGTGCAGTTAGCTAACACTGTCAGCTACTATGGAACAAGGTACACTGTTGGGATGATCCTCACCTATGGCTCTACTGGTGGACTACCTGACTTTGCTGAGATTGTTCAGATAGCCATTTTGGAcaactgtatatattttattgtaaagtTACCTGCTGCTTGGTATGAAGAGCATATAAGATCTTTTTACCTGGAGGTCACTGGGAAAATGGCTCTTTTGGATCAGCAGAAACTTGGTGACGTCCACCCCTTGGCCGCGTACAGTGTGGGAGGAAAACGCTTGGTTACACTCAAACGTCATATCTGTTGTGCATTTTAGAGATGGAGGCAAAGCTCAGAGTAATCCTTAATGACAGAGTTGAGAAGTTGGTCCTTCCATCAGGAATCCCACCCACTGTGGAGGAGCTGCAAACTGTTGTGAAGGAGACCTTTGGAATTTCTGATGAGTTCAGTCTTCAGTATTTGGACTCAGAATTTGAAGATTACTTTACTCTTCATACAAGTGACCAAATTAAACACAAAGACACCATAAAGATTGTTCACACTGCCCCAATTATCCTCAACTTGCTCCCACTTGATGAAAGTTTGGGCAGTTCCTTTGATCAACAGTCAACAGACTGTGACTCTGCATCTTATGCAGACTCATCTGCTGGAACGTCTTCTTCACAGGACACCATTTTCCTGTCTAGGCGAAATACTACAGAACGATGTCAAGGGTGGCCAAAGCAGTTCCCCATTCCAGGGTTTGCATATGAAACTGAGATGTACCTTGAAAGAGCCACTGAAGACTACAAGAAGAATGGAACACTTGTGACTACCTCAAAGATCAAGACAGACATACTTGAGAAGCTGGCTGaaactacagtgccttgcgaaagtattcggcccccttgaacttttcgaccttttgcca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801105.1 False 667 mRNA 0.44 2 2329654 2334637
XR_005639246.1 False 965 transcript 0.41 2 2329654 2335701
XR_005639247.1 False 399 transcript 0.37 2 2334724 2335701
XR_005639248.1 True 1287 transcript 0.43 2 2329654 2331243

Neighbor

gene id symbol gene type direction distance location
LOC120559398 LOC106959278 coding downstream 1541 2322320 ~ 2328113 (-)
LOC120559402 NA coding downstream 88556 2236290 ~ 2241098 (-)
LOC120558496 NA coding downstream 224043 2058191 ~ 2105611 (-)
LOC120558495 NA coding downstream 305216 2023301 ~ 2024438 (-)
LOC120559416 NA coding downstream 423331 1904835 ~ 1906323 (-)
LOC120558508 LOC104956416 coding upstream 55348 2391049 ~ 2392305 (-)
LOC120559393 NA coding upstream 85023 2420724 ~ 2423312 (-)
LOC120559396 NA coding upstream 113489 2449190 ~ 2462681 (-)
LOC120559397 NA coding upstream 152841 2488542 ~ 2491124 (-)
LOC120558513 NA coding upstream 197111 2532812 ~ 2545241 (-)
G46466 NA non-coding downstream 131137 2180796 ~ 2198517 (-)
LOC120559423 NA non-coding downstream 149446 2130821 ~ 2180208 (-)
LOC120559440 NA non-coding downstream 280966 2035867 ~ 2048688 (-)
LOC120559424 NA non-coding downstream 336656 1992230 ~ 1992998 (-)
G46386 LOC107707896 non-coding downstream 425037 1904014 ~ 1904617 (-)
G46701 NA non-coding upstream 1647 2337348 ~ 2338862 (-)
LOC120559437 NA non-coding upstream 8784 2344485 ~ 2346278 (-)
G46705 NA non-coding upstream 12081 2347782 ~ 2352561 (-)
G46732 NA non-coding upstream 128370 2464071 ~ 2465802 (-)
G46746 NA non-coding upstream 161278 2496979 ~ 2566450 (-)
rps21 rps21 other downstream 1084426 1236385 ~ 1245228 (-)
G46199 NA other downstream 1347543 976808 ~ 982111 (-)
LOC120558775 adrm1 other downstream 1391452 933032 ~ 938202 (-)
tpd52l2b NA other downstream 1402035 920249 ~ 927619 (-)
trnas-aga_6 NA other downstream 1424070 905500 ~ 905584 (-)
G46698 NA other upstream 10804 2346505 ~ 2347504 (-)
G46817 NA other upstream 947340 3283041 ~ 3285923 (-)
LOC120559401 NA other upstream 1155303 3491004 ~ 3493963 (-)
LOC120559679 LOC103384848,LOC102790723,LOC100693496 other upstream 1598810 3934511 ~ 3950171 (-)
G47058 NA other upstream 1619325 3955026 ~ 3955529 (-)

Expression


Co-expression Network