LOC120560688


Basic Information

Item Value
gene id LOC120560688
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 35895151 ~ 35898183 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU89802
AggtaatttgcataggctactgggAGAGAAGGCAGCTCCACAGGCATCCACAGATCCATGTGTTATAACCACATATCTGCAATGGcttccacaagttcacctggaacctccaaatctaGCACCTTTGACTGGGAGGCAGTTTATGGAGAGACTGCTGAGAAGGCTTCAGGAAGTTCTGCAACATCAGCCTGTGGATTTTGActatttacacttttacactgttttACACTGGTTTAAGTCATGAAATGGGACTTGTACCCTTTTGCATAGGCCAGTACACATTAACCCTCATATGCATTAtcattgcatttactgtaatttgttatgaaatatagagtcaaattcttacttgaatatatttatttgttattcatTGAAAAGGTACAGATTTAACTGTTTTGCTGGAGtccatactgtaaatgcatgtcatttcaaaaactgttAAGGATTAAAATCAGTACTACATATAAAGTAGTAGTGGTATGTGtcattttaaacaacaaaatggTTTTCCTGTGTTATCCTGCCATGTTTATGTGTGAAGAATCACATAGTTAAGTGCAGTCTTGCAAAGCTATCCGCCATTGTACTAGGAGTTAGTCATAGGGTAAATGGCTGCCCTCAGTTCTGCCATAGTCTGCAGCCTCAGAGGGCACTGGATGGGTGGTAAAAGTACTCCACTGGCAGACTCTTCTGTCACTCTGTCATGGTCCCCCTCCAAGAAAAGATCTTGTATATCCTGTAATTGACAAGTAATGTTATTAAAAGACTGCAGTTGCTTTTATAATACTTCACAAAacaattacacttttttttgtaaataaaatgcacacttggtgtgcattttattttttatgcacATATGGCCATAATAAATatccaaacaaaataaaaaaagaaggtttaattcaacattttgaagCTGCACAGGGTCCTGGAGAAGTCTGGTAAAGTGTCAAGGTCCCTCTGGAGGCGTGGTACAAATATATAGTGGGTTGGAGGGATCTAGCAGGTGACCCTCTTAAAGACAATCAGTGCACATCAGTGCACTATTAATATCACTTTCAACCCCCAAGTgggctagctgatgtggtattagctagcgttagcgctTGTTCGATGGGAGACTTAGCTACAATTAGCCACAAGTTAGCTGACGTGTGCTAGCCATGGATGAAGAgaacagttctaacctctgccaaaacaacacagcttaggcctacattaaaagttaacactaaaccagcctgcttctaagtgaaaaaaatggcagagataaacagacttacttagatttggaggttccaggtgaacttgtggaagCCATTGCAGATATAGGTAATCTGTGAGGATGCCTGTGGAGGTGCAGTCTCTCACAGTATGCAAATCATATGCAAATTACCTGTAAACCACGCCCTCGTTGTCCCTCCCCTCAggcccctcctccctacgccaaaacagtgacagaaagttgaaactgaaaaccagtgacattgtaaaaatcctgacagtgtaaaaagaaaaactgttactgaaaaaagtcagacatcaagaaaaaatgtagattgacattgaaaaacctatcataatacaaaaaaatgtcaaagtgaaataaaataatagcattgtgagattattatttttttatgtttgtgttttatatttcagttcaacatttttcagtaccaatatttgttgtttcaatgccaatttttattttcaataccacaggttactgtcactgttctagctccatacAAATGCTCTAGAGACAGACTGATGGAAGTGAGTCGGCACAATTTGTATCATCCCAGCCGTTTTCCACTGAACACAAGAAACACAGGAGTCATTCAGAGCTTCAATATCTCAACAGAAGGAATATCAGTGACACTACAGGCCGATACTTCACATACAGAGGAGGAAGTTACAAGCCATTTCTCTCGGAATGTAGAGGAAACAGCAACCATCTTTCTTTCTCCAATGAACAGGACAAGAGGAGGCAGGATGGGCTGGGACACtatgaagagaggaggagaaaaatgacatgtaatgagAAGGGGAGCTGTTAAGGCTTCCTTCCTCTCTTGGACTGTAATtgcttgtttatgtttatgtactTTATATATTTGTGCAAATACACTAAACAGAATTGAAGACAGCTGATTCCACTGAGTTATTCATTTGTTTGTCAGCCCTGTATCTATGCCTGCACTGTTCTTTATAAAAGATAAATATGGTGTCAAATGCGAGAGCTTTTAAACGTGATGTGAATGAAACTCTTAAATTGTATGAAATAT
>TU89804
AggtaatttgcataggctactgggAGAGAAGGCAGCTCCACAGGCATCCACAGATCCATGTGTTATAACCACATATCTGCAATGGcttccacaagttcacctggaacctccaaatctaGCACCTTTGACTGGGAGGCAGTTTATGGAGAGACTGCTGAGAAGGCTTCAGGAAGTTCTGCAACATCAGCCTGTGGATTTTGActatttacacttttacactgttttACACTGGTTTAAGTCATGAAATGGGACTTGTACCCTTTTGCATAGGCCAGTACACATTAACCCTCATATGCATTAtcattgcatttactgtaatttgttatgaaatatagagtcaaattcttacttgaatatatttatttgttattcatTGAAAAGGTACAGATTTAACTGTTTTGCTGGAGtccatactgtaaatgcatgtcatttcaaaaactgttAAGGATTAAAATCAGTACTACATATAAAGTAGTAGTGGTATGTGtcattttaaacaacaaaatggTTTTCCTGTGTTATCCTGCCATGTTTATGTGTGAAGAATCACATAGTTAAGTGCAGTCTTGCAAAGCTATCCGCCATTGTACTAGGAGTTAGTCATAGGGTAAATGGCTGCCCTCAGTTCTGCCATAGTCTGCAGCCTCAGAGGGCACTGGATGGGTGGTAAAAGTACTCCACTGGCAGACTCTTCTGTCACTCTGTCATGGTCCCCCTCCAAGAAAAGATCTTGTATATCCTGTAATTGACAAGTAATGTTATTAAAAGACTGCAGTTGCTTTTATAATACTTCACAAAacaattacacttttttttgtaaataaaatgcacacttggtgtgcattttattttttatgcacATATGGCCATAATAAATatccaaacaaaataaaaaaagaaggtttaattcaacattttgaagCTGCACAGGGTCCTGGAGAAGTCTGGTAAAGTGTCAAGGTCCCTCTGGAGGCGTGGTACAAATATATAGTGGGTTGGAGGGATCTAGCAGGTGACCCTCTTAAAGACAATCAGTGCACATCAGTGCACTATTAATATCACTTTCAACCCCCAAGTgggctagctgatgtggtattagctagcgttagcgctTGTTCGATGGGA
>XR_005639503.1
GGGGAGGGACAACGAGGGCGTGGTTTACAggtaatttgcataggctactgggAGAGAAGGCAGCTCCACAGGCATCCACAGATCCATGTGTTATAACCACATATCTGCAATGGcttccacaagttcacctggaacctccaaatctaGCACCTTTGACTGGGAGGCAGTTTATGGAGAGACTGCTGAGAAGGCTTCAGGAAGTTCTGCAACATCAGCCTGTGGATTTTGActatttacacttttacactgttttACACTGGTTTAAGTCATGAAATGGGACTTGTACCCTTTTGCATAGGCCAGTACACATTAACCCTCATATGCATTAtcattgcatttactgtaatttgttatgaaatatagagtcaaattcttacttgaatatatttatttgttattcatTGAAAAGGTACAGATTTAACTGTTTTGCTGGAGtccatactgtaaatgcatgtcatttcaaaaactgttAAGGATTAAAATCAGTACTACATATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89802 True 2297 lncRNA 0.39 2 35895179 35898183
TU89804 False 1125 lncRNA 0.39 2 35895179 35897011
XR_005639503.1 False 499 lncRNA 0.39 2 35895151 35896357

Neighbor

gene id symbol gene type direction distance location
rnf214 LOC104937101,LOC104945828,LOC102078715,LOC101469573,LOC102289946,LOC102794451,LOC102193077,LOC104967173 coding upstream 98917 35789091 ~ 35796234 (+)
LOC120561433 ppic coding upstream 211607 35675371 ~ 35683544 (+)
LOC120560626 NA coding upstream 275285 35613850 ~ 35619866 (+)
LOC120560627 NA coding upstream 283169 35607468 ~ 35611982 (+)
LOC120560628 NA coding upstream 291814 35596806 ~ 35603337 (+)
LOC120561090 NA coding downstream 129127 36027310 ~ 36035340 (+)
trnai-aau_2 NA coding downstream 263215 36161398 ~ 36161471 (+)
trnaf-gaa_4 NA coding downstream 278296 36176479 ~ 36176551 (+)
cemip2 tmem2 coding downstream 280046 36178229 ~ 36217618 (+)
klf9 LOC103362104 coding downstream 542949 36441132 ~ 36445767 (+)
G66997 NA non-coding upstream 477344 35388776 ~ 35417807 (+)
LOC120561203 NA non-coding upstream 637079 35255661 ~ 35258072 (+)
G66907 NA non-coding upstream 892955 35000278 ~ 35002196 (+)
G66834 NA non-coding upstream 1065497 34828892 ~ 34829654 (+)
G66830 NA non-coding upstream 1078824 34815589 ~ 34816327 (+)
G67202 NA non-coding downstream 157501 36055684 ~ 36059486 (+)
G67216 NA non-coding downstream 196632 36094815 ~ 36096123 (+)
G67219 NA non-coding downstream 222712 36120895 ~ 36128995 (+)
G67263 NA non-coding downstream 359523 36257706 ~ 36257913 (+)
G67326 NA non-coding downstream 708414 36606597 ~ 36609794 (+)
G67145 NA other upstream 40990 35841534 ~ 35854161 (+)
G67146 NA other upstream 43095 35840874 ~ 35852056 (+)
LOC120560625 cep120 other upstream 345920 35522665 ~ 35549231 (+)
LOC120561428 fam163b,LOC103374717,LOC102797860,LOC101061299,LOC102298266,LOC101485828,LOC104964271,LOC102215914 other upstream 835520 35046844 ~ 35059631 (+)
G66832 NA other upstream 1030461 34861499 ~ 34864690 (+)
trpm3 trpm3,LOC103470491,LOC103145554,LOC106928040,LOC101476865,LOC100708457 other downstream 343396 36241579 ~ 36492695 (+)
LOC120560081 NA other downstream 579615 36477798 ~ 36481311 (+)
LOC120560165 LOC104964460,LOC103362321 other downstream 1819720 37717903 ~ 37728705 (+)
si:ch211-214j8.12 NA other downstream 2411420 38309603 ~ 38323496 (+)
nkx6.3 nkx6-3,LOC102787307,LOC104940825,LOC102218504 other downstream 2457420 38355603 ~ 38407523 (+)

Expression


Co-expression Network