RNA id: TU89802


Basic Information

Item Value
RNA id TU89802
length 2297
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id LOC120560688
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 35895151 ~ 35898183 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AggtaatttgcataggctactgggAGAGAAGGCAGCTCCACAGGCATCCACAGATCCATGTGTTATAACCACATATCTGCAATGGcttccacaagttcacctggaacctccaaatctaGCACCTTTGACTGGGAGGCAGTTTATGGAGAGACTGCTGAGAAGGCTTCAGGAAGTTCTGCAACATCAGCCTGTGGATTTTGActatttacacttttacactgttttACACTGGTTTAAGTCATGAAATGGGACTTGTACCCTTTTGCATAGGCCAGTACACATTAACCCTCATATGCATTAtcattgcatttactgtaatttgttatgaaatatagagtcaaattcttacttgaatatatttatttgttattcatTGAAAAGGTACAGATTTAACTGTTTTGCTGGAGtccatactgtaaatgcatgtcatttcaaaaactgttAAGGATTAAAATCAGTACTACATATAAAGTAGTAGTGGTATGTGtcattttaaacaacaaaatggTTTTCCTGTGTTATCCTGCCATGTTTATGTGTGAAGAATCACATAGTTAAGTGCAGTCTTGCAAAGCTATCCGCCATTGTACTAGGAGTTAGTCATAGGGTAAATGGCTGCCCTCAGTTCTGCCATAGTCTGCAGCCTCAGAGGGCACTGGATGGGTGGTAAAAGTACTCCACTGGCAGACTCTTCTGTCACTCTGTCATGGTCCCCCTCCAAGAAAAGATCTTGTATATCCTGTAATTGACAAGTAATGTTATTAAAAGACTGCAGTTGCTTTTATAATACTTCACAAAacaattacacttttttttgtaaataaaatgcacacttggtgtgcattttattttttatgcacATATGGCCATAATAAATatccaaacaaaataaaaaaagaaggtttaattcaacattttgaagCTGCACAGGGTCCTGGAGAAGTCTGGTAAAGTGTCAAGGTCCCTCTGGAGGCGTGGTACAAATATATAGTGGGTTGGAGGGATCTAGCAGGTGACCCTCTTAAAGACAATCAGTGCACATCAGTGCACTATTAATATCACTTTCAACCCCCAAGTgggctagctgatgtggtattagctagcgttagcgctTGTTCGATGGGAGACTTAGCTACAATTAGCCACAAGTTAGCTGACGTGTGCTAGCCATGGATGAAGAgaacagttctaacctctgccaaaacaacacagcttaggcctacattaaaagttaacactaaaccagcctgcttctaagtgaaaaaaatggcagagataaacagacttacttagatttggaggttccaggtgaacttgtggaagCCATTGCAGATATAGGTAATCTGTGAGGATGCCTGTGGAGGTGCAGTCTCTCACAGTATGCAAATCATATGCAAATTACCTGTAAACCACGCCCTCGTTGTCCCTCCCCTCAggcccctcctccctacgccaaaacagtgacagaaagttgaaactgaaaaccagtgacattgtaaaaatcctgacagtgtaaaaagaaaaactgttactgaaaaaagtcagacatcaagaaaaaatgtagattgacattgaaaaacctatcataatacaaaaaaatgtcaaagtgaaataaaataatagcattgtgagattattatttttttatgtttgtgttttatatttcagttcaacatttttcagtaccaatatttgttgtttcaatgccaatttttattttcaataccacaggttactgtcactgttctagctccatacAAATGCTCTAGAGACAGACTGATGGAAGTGAGTCGGCACAATTTGTATCATCCCAGCCGTTTTCCACTGAACACAAGAAACACAGGAGTCATTCAGAGCTTCAATATCTCAACAGAAGGAATATCAGTGACACTACAGGCCGATACTTCACATACAGAGGAGGAAGTTACAAGCCATTTCTCTCGGAATGTAGAGGAAACAGCAACCATCTTTCTTTCTCCAATGAACAGGACAAGAGGAGGCAGGATGGGCTGGGACACtatgaagagaggaggagaaaaatgacatgtaatgagAAGGGGAGCTGTTAAGGCTTCCTTCCTCTCTTGGACTGTAATtgcttgtttatgtttatgtactTTATATATTTGTGCAAATACACTAAACAGAATTGAAGACAGCTGATTCCACTGAGTTATTCATTTGTTTGTCAGCCCTGTATCTATGCCTGCACTGTTCTTTATAAAAGATAAATATGGTGTCAAATGCGAGAGCTTTTAAACGTGATGTGAATGAAACTCTTAAATTGTATGAAATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89792 lncRNA upstream 17454 35871423 ~ 35877725 (+) False G67152
TU89604 lncRNA upstream 477372 35405895 ~ 35417807 (+) True G66997
TU89602 lncRNA upstream 488622 35388776 ~ 35406557 (+) False G66997
XR_005639572.1 lncRNA upstream 637107 35255661 ~ 35258072 (+) True LOC120561203
TU89494 lncRNA upstream 892983 35000278 ~ 35002196 (+) True G66907
TU89879 lncRNA downstream 157501 36055684 ~ 36059486 (+) True G67202
TU89894 lncRNA downstream 196632 36094815 ~ 36096123 (+) True G67216
TU89897 lncRNA downstream 222712 36120895 ~ 36128995 (+) True G67219
TU89957 lncRNA downstream 359523 36257706 ~ 36257913 (+) True G67263
TU89955 lncRNA downstream 531384 36429567 ~ 36492695 (+) False trpm3
XM_039803348.1 mRNA upstream 98945 35789091 ~ 35796234 (+) False rnf214
XM_039803347.1 mRNA upstream 98945 35789684 ~ 35796234 (+) True rnf214
XM_039804555.1 mRNA upstream 211635 35675371 ~ 35683544 (+) True LOC120561433
XM_039803305.1 mRNA upstream 275313 35613852 ~ 35619866 (+) False LOC120560626
XM_039804045.1 mRNA downstream 129127 36027310 ~ 36035340 (+) True LOC120561090
XM_039803579.1 mRNA downstream 280046 36178229 ~ 36217618 (+) True cemip2
XM_039803041.1 mRNA downstream 343396 36241579 ~ 36434202 (+) True trpm3
XM_039803036.1 mRNA downstream 343398 36241581 ~ 36429696 (+) False trpm3
XM_039803042.1 mRNA downstream 385889 36284072 ~ 36434202 (+) False trpm3
TU89780 other upstream 41018 35841534 ~ 35854161 (+) False G67145
TU89779 other upstream 41018 35842078 ~ 35854161 (+) True G67145
TU89783 other upstream 43123 35840874 ~ 35852056 (+) True G67146
XR_005639497.1 other upstream 347716 35522665 ~ 35547463 (+) False LOC120560625
TU89504 other upstream 835561 35046855 ~ 35059618 (+) False LOC120561428
unassigned_transcript_268 other downstream 263215 36161398 ~ 36161471 (+) True trnai-aau_2
unassigned_transcript_269 other downstream 278296 36176479 ~ 36176551 (+) True trnaf-gaa_4
TU89972 other downstream 580069 36478252 ~ 36481293 (+) False LOC120560081
TU90405 other downstream 1825078 37723261 ~ 37728658 (+) True LOC120560165
TU90566 other downstream 2463289 38361472 ~ 38407523 (+) False nkx6.3

Expression Profile