RNA id: TU90405


Basic Information

Item Value
RNA id TU90405
length 1643
RNA type TUCP
GC content 0.43
exon number 6
gene id LOC120560165
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 37717903 ~ 37728705 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcacacatttgtttttgttctccGTGATGCTTAAaccagcatttctttttttaaagctatagtgcgtagtttctgtcgcccccatgaggaattctacgTAACGACAACAACACTTGTGGCGtttccacatgatacaagccttccgtgatcacgcacGCACCTCCTcccccacacagttgctagtagccaaggaggacaagattaaaataacatgatggactcttcagaagaggtcattatcttcacttgagtttctgcgtgggaaagtcgccggacgccacaatcttctgaacacagccatactgagagatccagagagagttgtgtggagctgatagtcttaattagctttgtagcaactcatttggcaacggcttgaatgtaacggacgttcattaatttcaaaaagttacgcgctaaagctttaaagcttttttttcaaacacaaCAGAGCACTCCCTGACATTGGactaagagaaaataaatacataaagatatagaaatagaaataaacatATGACCATATAGAAACATATGACCTTTTCTGTGAATTTCATAATCTAATTTGTTACAGCAACCCAACGCATCTTATTAGACACCCAGATATTGTGTGACACGCGTCCATCTTTGCATTTTTTCCATTATATAAATTTCTTTTCAGTCTCTGTGTCCATTGGATTAAGGTTGGTAGTTTTGGCTCCTTCCAGTTCTTAAACCGACACTTCTACGTAATGTTTCAGAGGATGTTTTGACGAATGCAGCACCAGGTTCTTCACGGCTTGCGTTGTTGAGGCCTTGACCTTTCTTCACTGTCGAAGTGTCGTCTATAGAGACCTCAAGCCTGAAAATGTAGTCCTGGATCAGCATGGTTATGCCAAACTGATTGGTTCCAGATGTGTGAAGAAGGTTGAGGTGGGTAAGAAAACGTGGACGTTCTGCGGTACACCGGGCTACATGGCACCTGAAATCATCCTGAACAAAGGCCACAGTGTATCTGCAGACTTCTGGTCACTGGGCGTTTTTGTGTTTGAACTTCTGAGTGGCTCCCATTCTGCGACTCTGACCCGATGAAGATTCTCACTGCAACCATTCGAGGCATCGATCAAATCGACTTCCCAAAAACCATCAGCAAAAGTGCCTCCAATGTTATAAAGAAACTGTGCAGGAGCAATCCCTCGGAGCGACTGGGCGGTCAGAGGAACGGGGCCAAGGCCGTTCAGAAGCACAAGTGGTTTGAAGGATTCAACTGGGACGGACTCTGTAAAGGCACATTAAACCCACCGGTGATTCCCAAAGTGAAGGAGCCTTTGGAGAGCAGAACATGTGATCGTTACACGGAGGGCTCGGTGGATCTGTGCACAGACTGGGAGGATTTCTGAAcgggaatttaaaaaaaacatgtctgaCAATACTTTATCACTTTCAGGTTTAGTTCTCGTAAATATTTCACAGCCCTTTGTCTGATTATTGCCATCAAGAATTAATTCTATTTTTTAGACAGAGAAATATTTTCCACAGTACAGTGACTGTAGATATTGTTTGATAAATGAACCATGCTGCCTACTGTGTTGAGCTCAGACTGTTTTTGATGTACAATCCCTTCTCTATAGATTTATAAATATGAGAGTTTAGTGATGTCACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90396 lncRNA upstream 15803 37700514 ~ 37707458 (+) True G67628
TU90322 lncRNA upstream 146297 37575516 ~ 37576964 (+) True G67572
TU90315 lncRNA upstream 176037 37545912 ~ 37547224 (+) True G67570
TU90312 lncRNA upstream 218533 37502702 ~ 37504728 (+) True G67568
TU90307 lncRNA upstream 244393 37478139 ~ 37478868 (+) True G67563
TU90417 lncRNA downstream 39832 37768490 ~ 37781260 (+) True G67639
TU90421 lncRNA downstream 55016 37783674 ~ 37807644 (+) True G67643
TU90440 lncRNA downstream 94413 37823071 ~ 37823369 (+) True G67661
TU90445 lncRNA downstream 184975 37913633 ~ 37914035 (+) True G67666
TU90449 lncRNA downstream 193066 37921724 ~ 37936859 (+) True G67669
XM_039802386.1 mRNA upstream 5632 37708211 ~ 37717629 (+) True LOC120560164
XM_039804255.1 mRNA upstream 71356 37585850 ~ 37651905 (+) True bmp1a
XM_039804247.1 mRNA upstream 147804 37556767 ~ 37575457 (+) False kansl3
XM_039804242.1 mRNA upstream 147805 37553378 ~ 37575456 (+) False kansl3
XM_039804241.1 mRNA upstream 147805 37555232 ~ 37575456 (+) True kansl3
XM_039804207.1 mRNA downstream 1168 37729826 ~ 37762215 (+) True acsl2
XM_039804208.1 mRNA downstream 15542 37744200 ~ 37762215 (+) False acsl2
XM_039804560.1 mRNA downstream 212261 37940919 ~ 37950699 (+) False ido1
XM_039804559.1 mRNA downstream 212262 37940920 ~ 37950699 (+) True ido1
XM_039802148.1 mRNA downstream 286717 38015375 ~ 38027047 (+) True stc1
TU89972 other upstream 1241968 36478252 ~ 36481293 (+) False LOC120560081
unassigned_transcript_269 other upstream 1546710 36176479 ~ 36176551 (+) True trnaf-gaa_4
unassigned_transcript_268 other upstream 1561790 36161398 ~ 36161471 (+) True trnai-aau_2
TU89790 other upstream 1699997 35871423 ~ 36023264 (+) False G67152
TU89793 other upstream 1704008 35871423 ~ 36019253 (+) True G67152
TU90566 other downstream 632814 38361472 ~ 38407523 (+) False nkx6.3
unassigned_transcript_271 other downstream 702934 38431592 ~ 38431664 (+) True trnaf-gaa_6
TU90637 other downstream 867153 38595811 ~ 38598473 (+) False G67824
TU90882 other downstream 1681580 39410238 ~ 39413981 (+) True G68023
TU90883 other downstream 1681580 39410238 ~ 39413981 (+) False G68023

Expression Profile