RNA id: TU90440


Basic Information

Item Value
RNA id TU90440
length 299
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G67661
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 37823071 ~ 37823369 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcacatacagtattaggggaccactaaggcctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggcctatataaaagagacttcacatacagtattaggggaccactaaggcctatataaaagagacttcagatacagtattaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90421 lncRNA upstream 15427 37783674 ~ 37807644 (+) True G67643
TU90417 lncRNA upstream 41811 37768490 ~ 37781260 (+) True G67639
TU90396 lncRNA upstream 115613 37700514 ~ 37707458 (+) True G67628
TU90322 lncRNA upstream 246107 37575516 ~ 37576964 (+) True G67572
TU90315 lncRNA upstream 275847 37545912 ~ 37547224 (+) True G67570
TU90445 lncRNA downstream 90264 37913633 ~ 37914035 (+) True G67666
TU90449 lncRNA downstream 98355 37921724 ~ 37936859 (+) True G67669
TU90471 lncRNA downstream 165877 37989246 ~ 37989537 (+) True G67686
TU90482 lncRNA downstream 191223 38014592 ~ 38014799 (+) True G67697
TU90497 lncRNA downstream 289671 38113040 ~ 38144615 (+) False G67712
XM_039804207.1 mRNA upstream 60856 37729826 ~ 37762215 (+) True acsl2
XM_039804208.1 mRNA upstream 60856 37744200 ~ 37762215 (+) False acsl2
XM_039802388.1 mRNA upstream 94366 37717903 ~ 37728705 (+) False LOC120560165
XM_039802386.1 mRNA upstream 105442 37708211 ~ 37717629 (+) True LOC120560164
XM_039804255.1 mRNA upstream 171166 37585850 ~ 37651905 (+) True bmp1a
XM_039804560.1 mRNA downstream 117550 37940919 ~ 37950699 (+) False ido1
XM_039804559.1 mRNA downstream 117551 37940920 ~ 37950699 (+) True ido1
XM_039802148.1 mRNA downstream 192006 38015375 ~ 38027047 (+) True stc1
XM_039802149.1 mRNA downstream 192006 38015375 ~ 38027047 (+) False stc1
XM_039804515.1 mRNA downstream 226970 38050339 ~ 38053972 (+) True nkx2.7
TU90405 other upstream 94413 37723261 ~ 37728658 (+) True LOC120560165
TU89972 other upstream 1341778 36478252 ~ 36481293 (+) False LOC120560081
unassigned_transcript_269 other upstream 1646520 36176479 ~ 36176551 (+) True trnaf-gaa_4
unassigned_transcript_268 other upstream 1661600 36161398 ~ 36161471 (+) True trnai-aau_2
TU89793 other upstream 1803818 35871423 ~ 36019253 (+) True G67152
TU90566 other downstream 538103 38361472 ~ 38407523 (+) False nkx6.3
unassigned_transcript_271 other downstream 608223 38431592 ~ 38431664 (+) True trnaf-gaa_6
TU90637 other downstream 772442 38595811 ~ 38598473 (+) False G67824
TU90882 other downstream 1586869 39410238 ~ 39413981 (+) True G68023
TU90883 other downstream 1586869 39410238 ~ 39413981 (+) False G68023

Expression Profile