acsl2 (LOC104964461,LOC103362322)


Basic Information

Item Value
gene id acsl2
gene name LOC104964461,LOC103362322
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 37729826 ~ 37762215 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804207.1
GAAGGGTGTTGACCGGAAATAGAGTCATATTCTCCCTAGCTTGACGTGCGAAGACATTTCGATGGATCTGCAGTTTAAGTAGTAACTTGGGAGCACAATCGCAGGAACGTTTGGAGGCCTGAGTTTACCGAGcTATGCATTTCCAGGACTGGTTACAGTCACTTCGCTCAAGGGCTGGACTCAAAGCTTCTGAATCGCAGGACTTCTGGAGTCTTCTGCCGTCCTGCTCCCTGTCCTCCGCCTCTCTGCTGGGTCTCGGAGCCCTGGCGTCTCTCACCGCGTACTGGCTGGTGACCCGTCCTCGACCCATGCGTCCTCCCTGTGATCTACAAGCCCAGTCTGTCGCTGTGAATGGAGATCCCTGCTGCAGGCGATCGGCTCTTCTTAAAGACGACACACTGCTGGAGTTTTACTACGATGACACCAGGACGGTCTTTGACATGTTCCAGAGAGGCCTAAAGATCGCAGGAAGCGAGCCGTGTCTGGGCTTCAGACAGCCGGGCCAGCCCTACCAGTGGATCTCCTACACTGAGGTGGCTGAGCGGGCGCAGGTGCTGGGCTCGGGGCTGTTGGCCAAAGGCTGCCAGCCCAACCCGCAGCAGTTTGTCGGGATATTTGCACAGAACAGACCCGAGTGGATCATCTCTGAGCTGGCGTGCTACACCTTCTCCATGGCCGTGGTGCCTCTGTACGACACTCTGGGCCTGGAGGCCATGGTCCACATACTCAACCTGGCGGAGATCTCTCTGGTGATCTGCGACCGGGAGGAGAAAGCGGCAGCGTTGTTGGAGAACAAGGAGAAAGGGGTGACTCCGAAGCTCTCCTGCCTGGTTCTCTTCAACGAGTTCAGCGAAGCGTTCGTGGAGAGGGCGAAGAACTGCGAGATAGAGGTTCTGAAACTGGAGCAGCTTATGGACCTGGGAAGGCAGAACCTCAAAGATCCTGTGCCGCCCCAGCCCGAGGACCTGGCCGTGGTTTGCTTCACCAGTGGAACCACAGGGAAGCCCAAGGGAGCCATGATCACCCACGGCAACATCGCCTCCAACACTTCCTCTGTCATTAAGATCCTGGAGggttCGTTTGAGATCCGACAGCAGGACGTGTCCATCTCTTACCTGCCGCTTGCCCACATGTTTGAGAGGATGATTCAGGTCTCTATGTTCTGCCACGGGGCGAGAGTAGGATTCTACCAAGGCGACATTTCTCTTCTCATGGATGACATTAAAACTCTCAAACCCACCTTCTTTCCTGTTGTGCCTCGTTTGCTCAATCGCATCTATGACAAGATCCTGGGTTCTGTGACCTCTCCGATGCGACGGGCCTTGCTTCACTACGCTGTGAGGAGGAAGCAGGCAGAGCTCAGCAGTGGGGTCGTACGCAACAACAGTCTGTGGGACAAACTGGTGTTCAACAGGATTCAGGCCAGTTTAGGAGGTAATCTGCGGTTCGCTCTGACAGCTTCAGCACCCATCTCGCCCACGGTGCTGTCCTTCCTCAGAGCCACTCTGGGCTGTCTGATCTTCGAAGGTTACGGACAGACGGAGTGCACGGCCGGCTGCACTTTCTCCATGCCCGGAGACTGGAGCGCAGGTCATGTAGGGGCTCCGCTGCCCTGCGCCAAGGTGAAGCTGATAGACATCCCTGATATGAACTACTTTGCTAAGAACGGAGATGGAGAGATCTGCATTAGTGGCCCCAGCGTGTTCAGAGGTTACCTGAGGGACCCAGAAAGGACGGCTGAAGCCTTGGACAGCGACGGCTGGCTGCACAGTGGGGACGTAGGCCAGTGGCTTCCAAACGGGACGCTACGCATCATTGACAGGAAGAAGCACATCTTCAAGTTGTCCCAGGGAGAGTACATCGCTCCAGAGAAGATAGAAAATGTCTACACGCGTTGTGTTCCTGTGCTGCAGGTGTTCGTGCACGGAGATAGTTTACAGTCTTTTCTCATAGGCATAGTTGTACCCGACCCGGAGGTGTTTGTTGTCTGGGCTAAAGAGCGAGGCTTTGTGGGATCCTATGAAGAGCTGTGCCAGAATCCTGATTTAAAGAAAGCAGTATTAGAGGACATGACGGCTGTGGGGAAGGAAGCGGGGCTGAAGTCCTTTGAACAAGTGAAGGGCGTCTACTTGCACCCGGAGACGTTCAGCATCGCCAACGGCCTTCTCACCCCGACTCTAAAGAGTAGACGCGTCGACATCCGCAGAGTCTTTCAGGAACAAATATCAAGCATGTACAGCAAGACAGCCATCTGAAGGACCCCACTTAGttactctctctcactcacacacacacacacacacacacaatactgaAAGGTTACTGGTGTCCAATAAGagaggatgggggggggggggaaactgggacaggaaacaggaaacaggaaactggCAGAAGAAAGTTCAAATCACACACATCCAGCAGTGCCTTGCTCATGTATTTTTCTAATCGGTTCTGAAAGATTTCATAAACCAGTGTGAGCATATAACCCTTCACCTGGagttaaacaattaaaactAGGGTTTCAAGAAGCTgatttgtaaaaataataataattgctgAACTGTACATACTGCTTATATTGAGATTTGCTGACAGGACACTGACTAATTCCAGTAAAGTaaaactgaacagaaataaagaTTAGTACCTGAtga
>XM_039804208.1
TAGGCTGTTGCTCAGAAGcTATGCATTTCCAGGACTGGTTACAGTCACTTCGCTCAAGGGCTGGACTCAAAGCTTCTGAATCGCAGGACTTCTGGAGTCTTCTGCCGTCCTGCTCCCTGTCCTCCGCCTCTCTGCTGGGTCTCGGAGCCCTGGCGTCTCTCACCGCGTACTGGCTGGTGACCCGTCCTCGACCCATGCGTCCTCCCTGTGATCTACAAGCCCAGTCTGTCGCTGTGAATGGAGATCCCTGCTGCAGGCGATCGGCTCTTCTTAAAGACGACACACTGCTGGAGTTTTACTACGATGACACCAGGACGGTCTTTGACATGTTCCAGAGAGGCCTAAAGATCGCAGGAAGCGAGCCGTGTCTGGGCTTCAGACAGCCGGGCCAGCCCTACCAGTGGATCTCCTACACTGAGGTGGCTGAGCGGGCGCAGGTGCTGGGCTCGGGGCTGTTGGCCAAAGGCTGCCAGCCCAACCCGCAGCAGTTTGTCGGGATATTTGCACAGAACAGACCCGAGTGGATCATCTCTGAGCTGGCGTGCTACACCTTCTCCATGGCCGTGGTGCCTCTGTACGACACTCTGGGCCTGGAGGCCATGGTCCACATACTCAACCTGGCGGAGATCTCTCTGGTGATCTGCGACCGGGAGGAGAAAGCGGCAGCGTTGTTGGAGAACAAGGAGAAAGGGGTGACTCCGAAGCTCTCCTGCCTGGTTCTCTTCAACGAGTTCAGCGAAGCGTTCGTGGAGAGGGCGAAGAACTGCGAGATAGAGGTTCTGAAACTGGAGCAGCTTATGGACCTGGGAAGGCAGAACCTCAAAGATCCTGTGCCGCCCCAGCCCGAGGACCTGGCCGTGGTTTGCTTCACCAGTGGAACCACAGGGAAGCCCAAGGGAGCCATGATCACCCACGGCAACATCGCCTCCAACACTTCCTCTGTCATTAAGATCCTGGAGggttCGTTTGAGATCCGACAGCAGGACGTGTCCATCTCTTACCTGCCGCTTGCCCACATGTTTGAGAGGATGATTCAGGTCTCTATGTTCTGCCACGGGGCGAGAGTAGGATTCTACCAAGGCGACATTTCTCTTCTCATGGATGACATTAAAACTCTCAAACCCACCTTCTTTCCTGTTGTGCCTCGTTTGCTCAATCGCATCTATGACAAGATCCTGGGTTCTGTGACCTCTCCGATGCGACGGGCCTTGCTTCACTACGCTGTGAGGAGGAAGCAGGCAGAGCTCAGCAGTGGGGTCGTACGCAACAACAGTCTGTGGGACAAACTGGTGTTCAACAGGATTCAGGCCAGTTTAGGAGGTAATCTGCGGTTCGCTCTGACAGCTTCAGCACCCATCTCGCCCACGGTGCTGTCCTTCCTCAGAGCCACTCTGGGCTGTCTGATCTTCGAAGGTTACGGACAGACGGAGTGCACGGCCGGCTGCACTTTCTCCATGCCCGGAGACTGGAGCGCAGGTCATGTAGGGGCTCCGCTGCCCTGCGCCAAGGTGAAGCTGATAGACATCCCTGATATGAACTACTTTGCTAAGAACGGAGATGGAGAGATCTGCATTAGTGGCCCCAGCGTGTTCAGAGGTTACCTGAGGGACCCAGAAAGGACGGCTGAAGCCTTGGACAGCGACGGCTGGCTGCACAGTGGGGACGTAGGCCAGTGGCTTCCAAACGGGACGCTACGCATCATTGACAGGAAGAAGCACATCTTCAAGTTGTCCCAGGGAGAGTACATCGCTCCAGAGAAGATAGAAAATGTCTACACGCGTTGTGTTCCTGTGCTGCAGGTGTTCGTGCACGGAGATAGTTTACAGTCTTTTCTCATAGGCATAGTTGTACCCGACCCGGAGGTGTTTGTTGTCTGGGCTAAAGAGCGAGGCTTTGTGGGATCCTATGAAGAGCTGTGCCAGAATCCTGATTTAAAGAAAGCAGTATTAGAGGACATGACGGCTGTGGGGAAGGAAGCGGGGCTGAAGTCCTTTGAACAAGTGAAGGGCGTCTACTTGCACCCGGAGACGTTCAGCATCGCCAACGGCCTTCTCACCCCGACTCTAAAGAGTAGACGCGTCGACATCCGCAGAGTCTTTCAGGAACAAATATCAAGCATGTACAGCAAGACAGCCATCTGAAGGACCCCACTTAGttactctctctcactcacacacacacacacacacacacaatactgaAAGGTTACTGGTGTCCAATAAGagaggatgggggggggggggaaactgggacaggaaacaggaaacaggaaactggCAGAAGAAAGTTCAAATCACACACATCCAGCAGTGCCTTGCTCATGTATTTTTCTAATCGGTTCTGAAAGATTTCATAAACCAGTGTGAGCATATAACCCTTCACCTGGagttaaacaattaaaactAGGGTTTCAAGAAGCTgatttgtaaaaataataataattgctgAACTGTACATACTGCTTATATTGAGATTTGCTGACAGGACACTGACTAATTCCAGTAAAGTaaaactgaacagaaataaagaTTAGTACCTGAtga

Function

NR:

description
long-chain-fatty-acid--CoA ligase 1-like isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01897 ACSL, fadD; long-chain acyl-CoA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804207.1 True 2657 mRNA 0.53 20 37729826 37762215
XM_039804208.1 False 2543 mRNA 0.53 20 37744200 37762215

Neighbor

gene id symbol gene type direction distance location
LOC120560164 LOC104964460,LOC103362321 coding upstream 12197 37708211 ~ 37717629 (+)
bmp1a NA coding upstream 77921 37585850 ~ 37651905 (+)
kansl3 kansl3,LOC102793526,LOC106579846 coding upstream 154369 37553378 ~ 37575457 (+)
LOC120560121 gfpt1,LOC104930651,LOC103362312 coding upstream 258025 37446217 ~ 37471801 (+)
nfu1 nfu1,LOC103362311,LOC106520164,LOC100703913,LOC107393744 coding upstream 285485 37437882 ~ 37444341 (+)
ido1 LOC104931154 coding downstream 178704 37940919 ~ 37950699 (+)
stc1 LOC103362328,LOC104965051 coding downstream 253160 38015375 ~ 38027047 (+)
nkx2.7 NA coding downstream 288124 38050339 ~ 38053972 (+)
nkx3-1 NA coding downstream 312851 38075066 ~ 38077900 (+)
c6h9orf85 csgr18h9orf85,clg9h9orf85,LOC105926787,LOC101078288,LOC103145608,LOC106963215,LOC102236857 coding downstream 485812 38248027 ~ 38258116 (+)
G67628 NA non-coding upstream 22368 37700514 ~ 37707458 (+)
G67572 NA non-coding upstream 152862 37575516 ~ 37576964 (+)
G67570 NA non-coding upstream 182602 37545912 ~ 37547224 (+)
G67568 NA non-coding upstream 225098 37502702 ~ 37504728 (+)
G67563 NA non-coding upstream 250958 37478139 ~ 37478868 (+)
G67639 bin3 non-coding downstream 6275 37768490 ~ 37781260 (+)
G67643 NA non-coding downstream 21459 37783674 ~ 37807644 (+)
G67661 NA non-coding downstream 60856 37823071 ~ 37823369 (+)
G67666 NA non-coding downstream 151418 37913633 ~ 37914035 (+)
G67669 NA non-coding downstream 159509 37921724 ~ 37936859 (+)
LOC120560165 LOC104964460,LOC103362321 other upstream 1121 37717903 ~ 37728705 (+)
trpm3 trpm3,LOC103470491,LOC103145554,LOC106928040,LOC101476865,LOC100708457 other upstream 1237131 36241579 ~ 36492695 (+)
LOC120560081 NA other upstream 1248515 36477798 ~ 36481311 (+)
G67152 NA other upstream 1706562 35871423 ~ 36023264 (+)
G67145 NA other upstream 1875665 35841534 ~ 35854161 (+)
si:ch211-214j8.12 NA other downstream 547388 38309603 ~ 38323496 (+)
nkx6.3 nkx6-3,LOC102787307,LOC104940825,LOC102218504 other downstream 593388 38355603 ~ 38407523 (+)
G67824 NA other downstream 833596 38595811 ~ 38601821 (+)
G68023 NA other downstream 1648007 39410222 ~ 39461478 (+)
LOC120560010 sds other downstream 2100248 39862463 ~ 39878496 (+)

Expression


Co-expression Network