nfu1 (nfu1,LOC103362311,LOC106520164,LOC100703913,LOC107393744)


Basic Information

Item Value
gene id nfu1
gene name nfu1,LOC103362311,LOC106520164,LOC100703913,LOC107393744
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 37437882 ~ 37444341 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802300.1
CGTCACTTCCGCAAATAGAGCGACCATTTCCGATTTATTCGGGTTTTTTTTAGTTAACCATAACAAACATGGCGACTTACATGCAGGTCGGCAGGTTGCTGGGTATTTCAGCAAGGCTTTCGCGTCCTCTTGCAGTCAGTGGATGTCAGAGCGCCCGATTTCACTGGCCTTCACAGAACACCGCGGTCCCAAACAGATGGCCACAAAACCCCCATTGGGTTATTCCTGgcaggaCCATGTTTGTGCAGACGCAGGACACACCGAATCCAAACAGCCTAAAGTTTCTGCCCGGTTGTACAGTTCTTGAATCAGGGACTATGGAGTTTGCCAGCCCTCGTGACGCACACTGCTCACCCTTAGCCAGACAGCTGTTTAGGATTGAGGGAGTCAAGAGTGTCTTCCTGGGCCCCGACTTCATCACCATAACCAGGCCTGATAGCAATATGGAATGGAGAGTAATCAAGCCCGATGTTTTTGCTGCCATTATGGACTTTTTCACTTCTGGACTTCCTGTGGTCAATGAGGACAGCACACCTAGTGCAGATACAGCCCCAtcggatgatgatgatgaagtaGTCGCAATGATCAAAGAACTGCTGGATACCCGAATAAGGCCAACAGTGCAGGAGGATGGAGGCGACGTTGTATACAGGGGCTTTGTTGACGGCGTCGTTAAACTGAAGCTGCAGGGCTCCTGCACCAGTTGTCCCAGTTCCATTGTTACTTTGAAGAGTGGAATCCAAAACATGCTGCAGTTTTACGTCCCAGAAGTTGAATCAGTGGAGCAGGTgaaggatgaggatgaggaggaggctgCTCAAGTTTAAACTCCACTGAAGGCACATTTACACATTCCTCCCTCCCCCCAGACCGCCTCCGTTAATGCAAGCCATAGTTGCAATAAAATGAGAATGTGTATATCATAGCTGTGTGAGGgaactcat

Function

symbol description
nfu1 Predicted to enable 4 iron, 4 sulfur cluster binding activity and iron ion binding activity. Predicted to be involved in iron-sulfur cluster assembly and protein maturation by iron-sulfur cluster transfer. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in multiple mitochondrial dysfunctions syndrome 1. Orthologous to human NFU1 (NFU1 iron-sulfur cluster scaffold).

NR:

description
HIRA-interacting protein 5

GO:

id name namespace
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0005737 cytoplasm cellular_component
GO:0005506 iron ion binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function

KEGG:

id description
K22074 NFU1, HIRIP5; NFU1 iron-sulfur cluster scaffold homolog, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802300.1 True 944 mRNA 0.49 8 37437882 37444341

Neighbor

gene id symbol gene type direction distance location
med22 med22,LOC104930648 coding upstream 5772 37422456 ~ 37432110 (+)
LOC120560422 LOC103357666 coding upstream 15999 37388659 ~ 37421883 (+)
rab11fip1a rab11fip1 coding upstream 178572 37233747 ~ 37259310 (+)
adgra2 adgra2 coding upstream 206067 37160244 ~ 37231815 (+)
pdlim2 pdlim2 coding upstream 286224 37111859 ~ 37151658 (+)
LOC120560121 gfpt1,LOC104930651,LOC103362312 coding downstream 1876 37446217 ~ 37471801 (+)
kansl3 kansl3,LOC102793526,LOC106579846 coding downstream 109037 37553378 ~ 37575457 (+)
bmp1a NA coding downstream 141509 37585850 ~ 37651905 (+)
LOC120560164 LOC104964460,LOC103362321 coding downstream 263870 37708211 ~ 37717629 (+)
acsl2 LOC104964461,LOC103362322 coding downstream 285485 37729826 ~ 37762215 (+)
G67530 NA non-coding upstream 54060 37383588 ~ 37383822 (+)
G67522 NA non-coding upstream 92806 37344462 ~ 37345076 (+)
G67394 NA non-coding upstream 127696 37307240 ~ 37310186 (+)
G67373 NA non-coding upstream 407751 37011838 ~ 37030131 (+)
G67326 NA non-coding upstream 828088 36606597 ~ 36609794 (+)
G67563 NA non-coding downstream 33798 37478139 ~ 37478868 (+)
G67568 NA non-coding downstream 58361 37502702 ~ 37504728 (+)
G67570 NA non-coding downstream 101571 37545912 ~ 37547224 (+)
G67572 NA non-coding downstream 131175 37575516 ~ 37576964 (+)
G67628 NA non-coding downstream 256173 37700514 ~ 37707458 (+)
trpm3 trpm3,LOC103470491,LOC103145554,LOC106928040,LOC101476865,LOC100708457 other upstream 945187 36241579 ~ 36492695 (+)
LOC120560081 NA other upstream 956571 36477798 ~ 36481311 (+)
G67152 NA other upstream 1414618 35871423 ~ 36023264 (+)
G67145 NA other upstream 1583721 35841534 ~ 35854161 (+)
G67146 NA other upstream 1585826 35840874 ~ 35852056 (+)
LOC120560165 LOC104964460,LOC103362321 other downstream 273562 37717903 ~ 37728705 (+)
si:ch211-214j8.12 NA other downstream 865262 38309603 ~ 38323496 (+)
nkx6.3 nkx6-3,LOC102787307,LOC104940825,LOC102218504 other downstream 911262 38355603 ~ 38407523 (+)
G67824 NA other downstream 1151470 38595811 ~ 38601821 (+)
G68023 NA other downstream 1965881 39410222 ~ 39461478 (+)

Expression


Co-expression Network