pdlim2 (pdlim2)


Basic Information

Item Value
gene id pdlim2
gene name pdlim2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 37111859 ~ 37151658 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803981.1
TCTCGTGCGACACGCCCAGTTTCGCTGCGTGTGTCAAACCTTTTATTTTGGTAATAGCACATGGCACCGCGAGCTCATCCCAGTGAAACCGCTACGCGCGCTGCTACAGGTGGTGTGTTCACTGCGTGCCACTTTAACATCTGAAACAACAGAAGAGAGACGGCGACACAAGGGACTACCAGCGCTTCATCACCGCTTCAGCTGACGGGGGAAACGCATAAAAGCTGTTTGTTTGCTCGCATTTTGGACGCGGTTGTTGTTTCAGTCTAAGGTGAACTGGGACCTGCTGCCTACTGGCTGTATTCCGTGTTTTATCGACACATCACCGAGATTTAACAGGTGGAGAAGGCACCCTTTAAATCACTGCACTCACCTTGggTTTTCGACAAGAGTGTGTGCTGACTGATCACTAAATGGCGCTGACGGTGAACCTTATCGGTCCTTCACCATGGGGCTTCAGAATATTTGGAGGAAGGGACTTCAAGAAGGCCATAACTGTATCAAAGGTCAACGGGGGCAGCAAGGCAGAGAAGGCCAACCTGCAACCTGGTGACATTATCTTGGAGATCAACAGGGAGAACACGGCGGACATGCTTAACGTGGAGGCCCAGAACAAGATCAAGAACTCAAAGACTCAGCTGCAGCTGGTGGTGGAGAGacCTGAGCCTCCCAGCCCTGGACAGACTAACGGCATTGGCACCCCTGAGCAGCTCACCGGACGCTTCCAGGAGGCAGTAATAGTGAGCAGAGACGAGAATCAGAACTACAGAGAGTACACCATCTCCAGCCCTGCGTCGCTGTCCCCTGGACCTTATTCGCCAGATCCTTTTCCCAGTCCCGACGGGAAGAGGGAGAGGCTGACACCGACCATCAGCAAGAGTGTCCAGCTACGTCCATGGTCTCCAGTGGAGAAGAGTCACCGACTGTCCAGACCGCTGTCACAGGAGTTCTCCCCTTCAGACCACAGAAATAACTCTGTGTCCAGCAGAACCCCGACCCCACCAGGACGCTACTCGCCCCATAGCCCCATTGATCGAGACATACCCATGTCCCCACGTCGCAGCAGTTCGAGCTCTGACTTTGCCATGCAGAAGTTCGACAGGGACTCGGAGGTGTACAAGATGATTCAGGAGAATAAGGAGTCCCGCTCGGTGCCTCGTCAGTCCAACACCTTTAAAATACTGCAAGAGGTCCTGGAGGCTGACGAGAAAGAGGCAGCCTTGCGGTTCCCAGGGAAACTTTCGCCCAACGCCGCCACACTAAGCACCTCAGTGGGAGGAGTCAAAAAAATCCACACCTGTGAGAAGTGCGGCACAAGCATCGGCACGCTGGCCGTGCGCATCGCAGACGACCGCTTCCGCCACGCCGAGTGCTACACCTGCACAGACTGCGGTCTCAACCTCAGGATGAGGGGCCACTTTTGCGTCGGAGACGTGATGTACTGTGAGAAGCACGCCAAACAGAGGTACCAAGGCCCGGGCAGTTCCCCTCAAGCCACCGTGTCCCAGCGCCAGTGAGTCTGCCACTCCTCCACACCTGGCCCCGCTCTGGATCTGCCGGAAGCTCCGCGCCATCTGACTCAGTTATAGACCTTGGGATGGCTGCGTGGAGGTGGACACTAGTCAACAAAACGGCAGAAGATGTTCTTTTCTGATCACATTTAACCATACTTGCAATATTATGATTCACTTTCTTGCCTTTTCTTATAATCGTAAAGTGAATTggggctttgttttttttcatatggCCCGGCCTCCGCATTCTCTTTAGGTTATTCTTAGCTCTAATGATGCACAGCTGCCATGGACTCGAGCCACATTGTACTGAGGCCACATCTTCATAACGCCAACGCTCTAGACAAGCTCAACGGGACTGGCACTCTGACTCTTTGAGGATCTGGATAATCATTTGAATCTCCGGCTGACACAAAGGGACCAAAATCTCACCTACACTGCatgccattttcagtgtgtgtgtgcgtgagtgtgtgtttgtgcgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtctaGAGTCAGGCCAAAAGCCCTCGAGTTTTTTCTATATTTCTTTTGTATGAAGAATTTGAGTagaaattatgaaaaaagaatTATGTATTTGCTGACTTGTTTTGTTGCTTATGAGGGACTATGGATTCaatatacaaatatttttgatgtttttgaactGTATTCTATAACATAGaccatttaaaaaatgcatAATGTATGCACAGGGCCATTTAGTGTGAAGAGTTGAAATACTACACTTTACCAGTTACAGCAGTACTCAGAGATACACtataatgtttgcatttcatgtGGCACTCAATAAAATCGCACAACCTAAAGCTTC
>XM_039803982.1
GTGACACACAGGGTAGAGTCAACATCAGGCCGCATCACTGACGAAGGCTGTGGAAATTTTACACAGGGGTATGGCCACCAGCGAGAGCATTCAACAAGTGATTCATTCTAGGAATATTCCCCCCGCAGCCACAGTGGTTCATCTGATCGAGTGTGCCCTTTGCATCAAAGCTCAGCCAAAGCTTTCAGTTAGATGTACTGCGTCTGCTATGTTCATCAGCCATTCTTTCAGCAGTCAGCATGTTGTAGAGCCAGTGCTTGTTCACTTCTATCCGGTGGATTTCTGCCCAGACTTCAAGCAGAAGAAAAACAGTCTCAGggTTTTCGACAAGAGTGTGTGCTGACTGATCACTAAATGGCGCTGACGGTGAACCTTATCGGTCCTTCACCATGGGGCTTCAGAATATTTGGAGGAAGGGACTTCAAGAAGGCCATAACTGTATCAAAGGTCAACGGGGGCAGCAAGGCAGAGAAGGCCAACCTGCAACCTGGTGACATTATCTTGGAGATCAACAGGGAGAACACGGCGGACATGCTTAACGTGGAGGCCCAGAACAAGATCAAGAACTCAAAGACTCAGCTGCAGCTGGTGGTGGAGAGacCTGAGCCTCCCAGCCCTGGACAGACTAACGGCATTGGCACCCCTGAGCAGCTCACCGGACGCTTCCAGGAGGCAGTAATAGTGAGCAGAGACGAGAATCAGAACTACAGAGAGTACACCATCTCCAGCCCTGCGTCGCTGTCCCCTGGACCTTATTCGCCAGATCCTTTTCCCAGTCCCGACGGGAAGAGGGAGAGGCTGACACCGACCATCAGCAAGAGTGTCCAGCTACGTCCATGGTCTCCAGTGGAGAAGAGTCACCGACTGTCCAGACCGCTGTCACAGGAGTTCTCCCCTTCAGACCACAGAAATAACTCTGTGTCCAGCAGAACCCCGACCCCACCAGGACGCTACTCGCCCCATAGCCCCATTGATCGAGACATACCCATGTCCCCACGTCGCAGCAGTTCGAGCTCTGACTTTGCCATGCAGAAGTTCGACAGGGACTCGGAGGTGTACAAGATGATTCAGGAGAATAAGGAGTCCCGCTCGGTGCCTCGTCAGTCCAACACCTTTAAAATACTGCAAGAGGTCCTGGAGGCTGACGAGAAAGAGGCAGCCTTGCGGTTCCCAGGGAAACTTTCGCCCAACGCCGCCACACTAAGCACCTCAGTGGGAGGAGTCAAAAAAATCCACACCTGTGAGAAGTGCGGCACAAGCATCGGCACGCTGGCCGTGCGCATCGCAGACGACCGCTTCCGCCACGCCGAGTGCTACACCTGCACAGACTGCGGTCTCAACCTCAGGATGAGGGGCCACTTTTGCGTCGGAGACGTGATGTACTGTGAGAAGCACGCCAAACAGAGGTACCAAGGCCCGGGCAGTTCCCCTCAAGCCACCGTGTCCCAGCGCCAGTGAGTCTGCCACTCCTCCACACCTGGCCCCGCTCTGGATCTGCCGGAAGCTCCGCGCCATCTGACTCAGTTATAGACCTTGGGATGGCTGCGTGGAGGTGGACACTAGTCAACAAAACGGCAGAAGATGTTCTTTTCTGATCACATTTAACCATACTTGCAATATTATGATTCACTTTCTTGCCTTTTCTTATAATCGTAAAGTGAATTggggctttgttttttttcatatggCCCGGCCTCCGCATTCTCTTTAGGTTATTCTTAGCTCTAATGATGCACAGCTGCCATGGACTCGAGCCACATTGTACTGAGGCCACATCTTCATAACGCCAACGCTCTAGACAAGCTCAACGGGACTGGCACTCTGACTCTTTGAGGATCTGGATAATCATTTGAATCTCCGGCTGACACAAAGGGACCAAAATCTCACCTACACTGCatgccattttcagtgtgtgtgtgcgtgagtgtgtgtttgtgcgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtctaGAGTCAGGCCAAAAGCCCTCGAGTTTTTTCTATATTTCTTTTGTATGAAGAATTTGAGTagaaattatgaaaaaagaatTATGTATTTGCTGACTTGTTTTGTTGCTTATGAGGGACTATGGATTCaatatacaaatatttttgatgtttttgaactGTATTCTATAACATAGaccatttaaaaaatgcatAATGTATGCACAGGGCCATTTAGTGTGAAGAGTTGAAATACTACACTTTACCAGTTACAGCAGTACTCAGAGATACACtataatgtttgcatttcatgtGGCACTCAATAAAATCGCACAACCTAAAGCTTC

Function

symbol description
pdlim2 Predicted to enable actin binding activity and muscle alpha-actinin binding activity. Predicted to be involved in actin cytoskeleton organization; heart development; and muscle structure development. Predicted to be part of filamentous actin. Predicted to be active in Z disc; adherens junction; and stress fiber. Is expressed in aortic arch; digestive system; muscle; nervous system; and otic vesicle. Orthologous to human PDLIM2 (PDZ and LIM domain 2).

NR:

description
PREDICTED: PDZ and LIM domain protein 2

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23353 PDLIM1_2_3_4; PDZ and LIM domain protein 1/2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803981.1 True 2357 mRNA 0.50 10 37111859 37151658
XM_039803982.1 False 2298 mRNA 0.50 10 37115454 37151658

Neighbor

gene id symbol gene type direction distance location
sorbs3 sorbs3,LOC103357659,LOC100702030,LOC102307094 coding upstream 1459 37066417 ~ 37110400 (+)
ttc37 ttc37 coding upstream 49344 37038149 ~ 37062515 (+)
arsk arsk coding upstream 73894 37030541 ~ 37037965 (+)
adgrv1 adgrv1 coding upstream 132236 36803550 ~ 36979623 (+)
polr3g polr3g coding upstream 314685 36789748 ~ 36797174 (+)
adgra2 adgra2 coding downstream 8586 37160244 ~ 37231815 (+)
rab11fip1a rab11fip1 coding downstream 82089 37233747 ~ 37259310 (+)
LOC120560422 LOC103357666 coding downstream 237001 37388659 ~ 37421883 (+)
med22 med22,LOC104930648 coding downstream 270798 37422456 ~ 37432110 (+)
nfu1 nfu1,LOC103362311,LOC106520164,LOC100703913,LOC107393744 coding downstream 286224 37437882 ~ 37444341 (+)
G67373 NA non-coding upstream 81728 37011838 ~ 37030131 (+)
G67326 NA non-coding upstream 502065 36606597 ~ 36609794 (+)
G67263 NA non-coding upstream 853946 36257706 ~ 36257913 (+)
G67219 NA non-coding upstream 982864 36120895 ~ 36128995 (+)
G67216 NA non-coding upstream 1015736 36094815 ~ 36096123 (+)
G67394 NA non-coding downstream 155582 37307240 ~ 37310186 (+)
G67522 NA non-coding downstream 192804 37344462 ~ 37345076 (+)
G67530 NA non-coding downstream 231930 37383588 ~ 37383822 (+)
G67563 NA non-coding downstream 326481 37478139 ~ 37478868 (+)
G67568 NA non-coding downstream 351044 37502702 ~ 37504728 (+)
trpm3 trpm3,LOC103470491,LOC103145554,LOC106928040,LOC101476865,LOC100708457 other upstream 619164 36241579 ~ 36492695 (+)
LOC120560081 NA other upstream 630548 36477798 ~ 36481311 (+)
G67152 NA other upstream 1088595 35871423 ~ 36023264 (+)
G67145 NA other upstream 1257698 35841534 ~ 35854161 (+)
G67146 NA other upstream 1259803 35840874 ~ 35852056 (+)
LOC120560165 LOC104964460,LOC103362321 other downstream 566245 37717903 ~ 37728705 (+)
si:ch211-214j8.12 NA other downstream 1157945 38309603 ~ 38323496 (+)
nkx6.3 nkx6-3,LOC102787307,LOC104940825,LOC102218504 other downstream 1203945 38355603 ~ 38407523 (+)
G67824 NA other downstream 1444153 38595811 ~ 38601821 (+)
G68023 NA other downstream 2258564 39410222 ~ 39461478 (+)

Expression


Co-expression Network