rab11fip1a (rab11fip1)


Basic Information

Item Value
gene id rab11fip1a
gene name rab11fip1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 37233747 ~ 37259310 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803429.1
AGTAATAACATCAGGGAAGTGAAGTGTTTTACGTAGCGGAGGCAAAACAAGGAAACTGTTTTTATGAAATCCGCTTACAGGAGTTAGTGAGTTGGTCTTACTGCATGCTACACAGGCTAGTGCTAGCGTTAAGTTGGTTAACCGAGTGTTAACTTAACTCAAGTGTTATTTGAGGCTTAGATATAACGTTACGAAGAGCCCGGGATAAGTATTACGACATCAACCTGAGCTTCCAGAACTGAAGTCAAGCTAGTAGGTAACCTAAACCTACCGCCGCAGAGGACGGCGAAGGGGAATTAGCTACAGAGTTCAGGAAAAGGTTAGCCAACAGCCTGGCGTCGTTAGCTTTTTAATAAGCCAATTGGTGTTAACTTTTGGTAAAGCTTAACGGACTTCCGCTATGTCTCTGGCCGACCAGAGCCAGCAGTGGTACCCTACGAGTGTCCAGGTAACCGTGCATCAGGCTCGGAACCTGCGCTCCAAGGGCAAGAATGGCACCAACGACGCCTACGCCATCATCCAGGTGGCCAAAGACAAGTTTTCTACCTCCGTGTCTGAGAAATGCGTCGCTCCAGTGTGGAAAGAAGAGGCTTCCTTCGACCTGCCGCTCTTCCACCCGGGAAACGGAGACCGATGCACGCTGTACGTCATCGTGATGCACCGGGCTCAAGTGGGGCTCGACAAGTTCTTGGGTCAAGCTGTGGTGAACTTACTGGATCTTCATGACAACAAGTCAGGCAAAAAGACCGATTGGTTCAAGCTGGTGGACAAGAGTGGGAAAGAGGACAAGGTGCGAGGGGAGGTGCTGCTAGATATCCAGTTCATGAGGAACAACATGTCAGCTAGCATGTTCGACCTCTCCATGCAGGACAAGCCGCGCTCCCGCATCTCCAAGCTGAAGGACAAAGTCCGGGGGAAGAAAAAGGACGGCTTCTCCGACTCGGCCTCGGCTATCGTTCCCTCTGTCAGCAAGGGCCTCACCGACAGCGAGGGAGAGGCTGACGCGCAGTCCCTCGACCAGTCTCCGGGAGTGAAAAAGAAATCTAAGCTCAAAACCCTCTTTGCTCCCAAATCAAACTTGCAGCGAAACATCTCACAGTCCATGTCCACGCTGGGGACTCTTCCCGAGAAGAATTCCTCGCTCAGTAGCAGCCGCTCATCTGGCCTCAATGTAGACTCTCCTGAAGTGAAAAAGAAATTCAAATTCCTGGGACACAAGCGGACAGGAAGCTCTGACAGCAAGTTGTCTCAAGGTCCTTTCTCCCTGCTGGGTCGCTCCAAGCAGAGCAACAGTGACCTGAACAACCTGTGCATCAACGGCAGCCACGTGTACGCAGAGGACACAGAGCCCAAGAGTGGATCTACTCTCAGTCTGAACAGCTCAGGCCAAGGATCAGTGGAGGATGTCCGCAGACACACCTCAGATGTCCCTGCAGATTCCACTTTCAGCATACCTGTCCCCTCCTTCAAGCATGAGTCTACAGACAGGGCAACCCTGGAGCAGCAGCGCCatcaagaggaggaggagagaaggcaGGCAGAGGCGAGGCGCATGGCAGAGGCCAAGAggctggaggaagaggagaaataCAAGCTAGAGGCCAAGAGGctgcaggaggaagaggagcgcaGACACCGGGAAGAACAGGAAAGGAAGAAACGCTTCATTGAGGATGAAGCAAAGCGGAAGAAACAGACGGAGGAGGAAAAAGAGCGGAGAAAGCAAGAGGAAGCAGCCGAACACCAGAAGCTGGAGGAGGAGCGGCGCAGAGCCGAGGAGCAGAAACGACAGGAGGAGGCATCCATGAGCGACCGGCTGACATCTCTGTTTGGAATGATCCgaaagaaggaggagaagaaggaggaggtggtACCGCAGCAAGCTGCAGAGGAGAAAACAGCCCCTCGCAGCAACATCTCCCACCGCTCCAACAACCCGTTTGACGACATTCCCCTCAGCTCCGATCCTCCAGTTAGCAGTCATGAAAGCCCAGCTGATGATCAGAAATCCAGCCTCaaccaacaaaaagaaaaaaaagtgtccgCAGTCAAGCCCAGATTTACTCCATCTCTGGAGTCTGAACCCGCTGACTGCCAACTCCCCAGTCAGCTGTGTCCTTCCCCAACCGCTTCTGAGTCCACCCTCTCTAGTGTCCCATCGGAGTCCCCTGATACTTTCTCCAGTCTCCACTCATCCCTGGCTCCACCCAACATAAGTCAGAGCCTGTCTGGTTCTCCTCGTGGCAGCATAGAGGATCTTTCCTGTGTGGGATCTTCACCCACCATGGCGGATAAGAAGAGAAGAGCCCCCGTGCCGCCCTTGTACAAAGTACACGGGACCCAACCTGTCAGGGAGATCACGAACCCTGCATACGCAGAGGCAGATGGGCCGCAGCAAGGCAGAAAAGTAATGTCCGTACCGCTCCCCGATTACGAAACCCTCTTTCCTCAGAAGAGGCACGGAGTGCAAGGGCACACTCGATGGGACCATATAATCGCTGAGGTCAATCAGAAACACAGGCACAGTCAAGAGATGAGCGTGGATGGCCCACAGGAGCATGAACCCAGTCTTAGGTCGTCACCCCCAAAGGAGAGTCCCGCTATTAGGCATTATCAAACGCAACCTCAAGACACAAAACCTGTGTCGTCAAAAAAAGTTGCGGCCCCAGCTCCTCCTAAATCAGTCCTCCAACCTCCACAACCTCGATCAGATTCCAGCCAGAGACAGAGCCAGAATACCGCTGAACAATCTCTCATGAGGTCTAATCTGCCCGCGGTCCCAGAACCTGTAAACGCAAGCAGAGAAAGTCTCTCGGGGATGTCCAGGGGTGGAGCAAGGGAGGCGTTGCACCCACCACCCGCAGCGACGAGTCCACCCAGACCAACTAGCCAAGTGGACTTGGATACGTCAGATGATGAAAACCAAGTGCAAGTCACTGTAAAGAAAGATGCACCCACAGCTAAACCCAGACAGAATGCCAATGGCAAAGAGCCAGAACAGCAAGACGATTCTGCTGTGACACCAGCGGTCTCAGACAAATATACAAACAGTAACCTCCAAACATTATCTAGTTCACGCATTAGCAGCACGGTCAGGAAAGACGGGCAGGAACGGGAGAACTTTGAGTTTGACCCGTTCCCCAGCACTGAGCTTCTTTCCAAAGACCCATGGGCACAGCTGACTCGGAACCAAGACGTAGATGACCTTTTTACCGGCAGCGTACAAAAAGGGCGGAAAGTTGACGACCGGGGAATGTCGCAAGACGATCTCGATAACCTTTTCAGTCAAGAGAAGCGTACAGATCCATTTGATTTTAACGGCAGCGATTCAGAAGAACCCAGTGAGCACCGGACAAAAGATGAAGATTCAAAGCATGTCGGTCCTGCTTTCCAACGAAGGAATTCATCGAGACAAAACAAGATTATTCCGTCCACACTTCGCTCGGATAATAACACTTCCAAGTCTCGAAAAGAGCCCGCATATAAAGCAGAAACTACGGTAACCACAGCTTATCAAGGCCTCTCCGCAAGAGGTGTTAGCAGTGGGCCTATCGCACCAAAGCTTCCAGCTGATGCGAAAACCCAAAGCAAATTTAATGGAGGAGAGGATCCATTTGGAGCTGAGCCTTTTACCCCTACCTTGACTTCCCCAGAACCCCTCCAGGTAGTTATGGAGGAACCAGCGCCTCAGGCAGGAGGCAAGTTTCCCCCAGACAAACCTTTGCGAGCATGGGTCTCACCCTCTGATGTTCAGCCTGTCAGTGCTCAGAATAGCAATGGAGGTGGGCTAGCCTTTACTCCACGCAGGCCTCATCCAGTGAAGCCCATGAGTTTAGAGAGCCAGGCTCCCATCAGCAGCCCCGCTGTGAAAGAGATAAAGGTCCGCGAGAGCCCACCGGGGAAGATTCAGGTGTCGCACTCGGTGCAGAGCGGCCCGTACACTCAGCTGACACAGGAAGAGTTGATCACGCTGGTGGTGCGGCAGCAAGCCGACCTGTCCCGCAAGGACTCTCAGATCGTCGAGCTGGAGGAGTACATCGACAGACTGCTGGTCCGAGTCATAGAGGAGCAACCCAGCATCCTGCAATCTCTGAACGCCTCCAAGCCAGTGTAAGGTACCGGCCGCTGGAAGACCAGCATCTCACCCAGAGACCCAGTTGTacgtctgtttctgtgtgtgtttgaactgTTTGTCACTGTGTACCGCGAGACGCGATCTCCACCAAGGTCTTAGAGCATTATGCACTTTCTTAGTTTCAGAGTCAAATTTGCTTGACAATGCTGGAAAATTTGTCTCTGGAGTAAAAACATGTAGTGAACCCTTAATAACAAGCAAGTAAATCATCTTTATATGAGCAAATGAATGTTTGTTTTGACACTAAGGTACTGggatttgctttaaaaaaaccaAATGAAAATCTATTCAACATTTTGATTTCTATACCATGCTTGATGAAACTTGGGTTGAGCTTTATTTAATATACTTATGGTGCAGATTTAAAAAAgagaagtttttattttatttttttcaaacgaTTATCCAGCATTTTCACCACTTTTCACTGGGTTTTGTGTTAATGTACTCCTGTGTTATAATCATATACATAACCTTCAACAATCATTCCAAATTCATGCATCATCTTAATTTTTCTCTCATATGATCTCATGAGCGGAGTCCAGATTAAGATTTATATAACAAGGGCACATTAACGTCTCCCTCCACCACTAaagtcttatttttttaattttatttgttgATCCATTTGTCTGTGTcggtgtgttttattttttatttttttaaccagacAACAATCCTCCCGCATTTAACTCACCGCAGTCGGAATGTCAGCTGATCATCCCAAACGTATTGTGCCTGTTTTTGCTTCAAAGAGGTGTTATTTAGAAAAACCAGCAATACATAAAAAGCAAGCAGTTGCAACGTACTGTACATAGTCTGAATTACACAGCAGCTATAGCAGTTATTTCTGTCATGTGGTTGTTATGGAGCATGTgcacatatgtttttttttttttttttaaattatgcaAGAAATCCAAACTATTCTAATAATAACGTGATCACTGTGATGTTTGTGTTGTACTTGTAAAATGAAAACCAAGAGATAATCACGCGAGGAACGGTAAAAGACTCAGTATCTGTAATAACCAACCAGCCTTGTCTTTATATTTGAACTACACTTATGAATGAACATCTATGCCTTTATATGACCATATTATTGAATGTCTTGGCAGCAATGATAGCAATATTAATCTTCAGAATGTACATACCTGTGCCTTCAAAACCTTTATCATGACTTGTGTGTCTGATTTGCTGGATGGATGGTTGCTGGAGTGAGAGCTCAAAGAATGTGCAGCCTGATGTATCAAGAGTCCGTTGACGTGACAATAACACTACAGCTGATGTAAAACGTCTGCAGGAAGTGATGCTGAGCAaaatatgattttattttaaataaagacaCTACTTATTTCACCA
>XM_039803430.1
AGTAATAACATCAGGGAAGTGAAGTGTTTTACGTAGCGGAGGCAAAACAAGGAAACTGTTTTTATGAAATCCGCTTACAGGAGTTAGTGAGTTGGTCTTACTGCATGCTACACAGGCTAGTGCTAGCGTTAAGTTGGTTAACCGAGTGTTAACTTAACTCAAGTGTTATTTGAGGCTTAGATATAACGTTACGAAGAGCCCGGGATAAGTATTACGACATCAACCTGAGCTTCCAGAACTGAAGTCAAGCTAGTAGGTAACCTAAACCTACCGCCGCAGAGGACGGCGAAGGGGAATTAGCTACAGAGTTCAGGAAAAGGTTAGCCAACAGCCTGGCGTCGTTAGCTTTTTAATAAGCCAATTGGTGTTAACTTTTGGTAAAGCTTAACGGACTTCCGCTATGTCTCTGGCCGACCAGAGCCAGCAGTGGTACCCTACGAGTGTCCAGGTAACCGTGCATCAGGCTCGGAACCTGCGCTCCAAGGGCAAGAATGGCACCAACGACGCCTACGCCATCATCCAGGTGGCCAAAGACAAGTTTTCTACCTCCGTGTCTGAGAAATGCGTCGCTCCAGTGTGGAAAGAAGAGGCTTCCTTCGACCTGCCGCTCTTCCACCCGGGAAACGGAGACCGATGCACGCTGTACGTCATCGTGATGCACCGGGCTCAAGTGGGGCTCGACAAGTTCTTGGGTCAAGCTGTGGTGAACTTACTGGATCTTCATGACAACAAGTCAGGCAAAAAGACCGATTGGTTCAAGCTGGTGGACAAGAGTGGGAAAGAGGACAAGGTGCGAGGGGAGGTGCTGCTAGATATCCAGTTCATGAGGAACAACATGTCAGCTAGCATGTTCGACCTCTCCATGCAGGACAAGCCGCGCTCCCGCATCTCCAAGCTGAAGGACAAAGTCCGGGGGAAGAAAAAGGACGGCTTCTCCGACTCGGCCTCGGCTATCGTTCCCTCTGTCAGCAAGGGCCTCACCGACAGCGAGGGAGAGGCTGACGCGCAGTCCCTCGACCAGTCTCCGGGAGTGAAAAAGAAATCTAAGCTCAAAACCCTCTTTGCTCCCAAATCAAACTTGCAGCGAAACATCTCACAGTCCATGTCCACGCTGGGGACTCTTCCCGAGAAGAATTCCTCGCTCAGTAGCAGCCGCTCATCTGGCCTCAATGTAGACTCTCCTGAAGTGAAAAAGAAATTCAAATTCCTGGGACACAAGCGGACAGGAAGCTCTGACAGCAAGTTGTCTCAAGGTCCTTTCTCCCTGCTGGGTCGCTCCAAGCAGAGCAACAGTGACCTGAACAACCTGTGCATCAACGGCAGCCACGTGTACGCAGAGGACACAGAGCCCAAGAGTGGATCTACTCTCAGTCTGAACAGCTCAGGCCAAGGATCAGTGGAGGATGTCCGCAGACACACCTCAGATGTCCCTGCAGATTCCACTTTCAGCATACCTGTCCCCTCCTTCAAGCATGAGTCTACAGACAGGGCAACCCTGGAGCAGCAGCGCCatcaagaggaggaggagagaaggcaGGCAGAGGCGAGGCGCATGGCAGAGGCCAAGAggctggaggaagaggagaaataCAAGCTAGAGGCCAAGAGGctgcaggaggaagaggagcgcaGACACCGGGAAGAACAGGAAAGGAAGAAACGCTTCATTGAGGATGAAGCAAAGCGGAAGAAACAGACGGAGGAGGAAAAAGAGCGGAGAAAGCAAGAGGAAGCAGCCGAACACCAGAAGCTGGAGGAGGAGCGGCGCAGAGCCGAGGAGCAGAAACGACAGGAGGAGGCATCCATGAGCGACCGGCTGACATCTCTGTTTGGAATGATCCgaaagaaggaggagaagaaggaggaggtggtACCGCAGCAAGCTGCAGAGGAGAAAACAGCCCCTCGCAGCAACATCTCCCACCGCTCCAACAACCCGTTTGACGACATTCCCCTCAGCTCCGATCCTCCAGTTAGCAGTCATGAAAGCCCAGCTGATGATCAGAAATCCAGCCTCaaccaacaaaaagaaaaaaaagtgtccgCAGTCAAGCCCAGGCCTCATCCAGTGAAGCCCATGAGTTTAGAGAGCCAGGCTCCCATCAGCAGCCCCGCTGTGAAAGAGATAAAGGTCCGCGAGAGCCCACCGGGGAAGATTCAGGTGTCGCACTCGGTGCAGAGCGGCCCGTACACTCAGCTGACACAGGAAGAGTTGATCACGCTGGTGGTGCGGCAGCAAGCCGACCTGTCCCGCAAGGACTCTCAGATCGTCGAGCTGGAGGAGTACATCGACAGACTGCTGGTCCGAGTCATAGAGGAGCAACCCAGCATCCTGCAATCTCTGAACGCCTCCAAGCCAGTGTAAGGTACCGGCCGCTGGAAGACCAGCATCTCACCCAGAGACCCAGTTGTacgtctgtttctgtgtgtgtttgaactgTTTGTCACTGTGTACCGCGAGACGCGATCTCCACCAAGGTCTTAGAGCATTATGCACTTTCTTAGTTTCAGAGTCAAATTTGCTTGACAATGCTGGAAAATTTGTCTCTGGAGTAAAAACATGTAGTGAACCCTTAATAACAAGCAAGTAAATCATCTTTATATGAGCAAATGAATGTTTGTTTTGACACTAAGGTACTGggatttgctttaaaaaaaccaAATGAAAATCTATTCAACATTTTGATTTCTATACCATGCTTGATGAAACTTGGGTTGAGCTTTATTTAATATACTTATGGTGCAGATTTAAAAAAgagaagtttttattttatttttttcaaacgaTTATCCAGCATTTTCACCACTTTTCACTGGGTTTTGTGTTAATGTACTCCTGTGTTATAATCATATACATAACCTTCAACAATCATTCCAAATTCATGCATCATCTTAATTTTTCTCTCATATGATCTCATGAGCGGAGTCCAGATTAAGATTTATATAACAAGGGCACATTAACGTCTCCCTCCACCACTAaagtcttatttttttaattttatttgttgATCCATTTGTCTGTGTcggtgtgttttattttttatttttttaaccagacAACAATCCTCCCGCATTTAACTCACCGCAGTCGGAATGTCAGCTGATCATCCCAAACGTATTGTGCCTGTTTTTGCTTCAAAGAGGTGTTATTTAGAAAAACCAGCAATACATAAAAAGCAAGCAGTTGCAACGTACTGTACATAGTCTGAATTACACAGCAGCTATAGCAGTTATTTCTGTCATGTGGTTGTTATGGAGCATGTgcacatatgtttttttttttttttttaaattatgcaAGAAATCCAAACTATTCTAATAATAACGTGATCACTGTGATGTTTGTGTTGTACTTGTAAAATGAAAACCAAGAGATAATCACGCGAGGAACGGTAAAAGACTCAGTATCTGTAATAACCAACCAGCCTTGTCTTTATATTTGAACTACACTTATGAATGAACATCTATGCCTTTATATGACCATATTATTGAATGTCTTGGCAGCAATGATAGCAATATTAATCTTCAGAATGTACATACCTGTGCCTTCAAAACCTTTATCATGACTTGTGTGTCTGATTTGCTGGATGGATGGTTGCTGGAGTGAGAGCTCAAAGAATGTGCAGCCTGATGTATCAAGAGTCCGTTGACGTGACAATAACACTACAGCTGATGTAAAACGTCTGCAGGAAGTGATGCTGAGCAaaatatgattttattttaaataaagacaCTACTTATTTCACCA

Function

symbol description
rab11fip1 Predicted to enable small GTPase binding activity. Involved in negative regulation of adiponectin secretion. Located in cytosol and intracellular membrane-bounded organelle.

NR:

description
rab11 family-interacting protein 2-like

GO: NA

KEGG:

id description
K12484 RAB11FIP1_2_5; Rab11 family-interacting protein 1/2/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803429.1 True 5497 mRNA 0.49 6 37233747 37259310
XM_039803430.1 False 3748 mRNA 0.47 5 37233747 37259310

Neighbor

gene id symbol gene type direction distance location
adgra2 adgra2 coding upstream 1932 37160244 ~ 37231815 (+)
pdlim2 pdlim2 coding upstream 82089 37111859 ~ 37151658 (+)
sorbs3 sorbs3,LOC103357659,LOC100702030,LOC102307094 coding upstream 123347 37066417 ~ 37110400 (+)
ttc37 ttc37 coding upstream 171232 37038149 ~ 37062515 (+)
arsk arsk coding upstream 195782 37030541 ~ 37037965 (+)
LOC120560422 LOC103357666 coding downstream 129349 37388659 ~ 37421883 (+)
med22 med22,LOC104930648 coding downstream 163146 37422456 ~ 37432110 (+)
nfu1 nfu1,LOC103362311,LOC106520164,LOC100703913,LOC107393744 coding downstream 178572 37437882 ~ 37444341 (+)
LOC120560121 gfpt1,LOC104930651,LOC103362312 coding downstream 186907 37446217 ~ 37471801 (+)
kansl3 kansl3,LOC102793526,LOC106579846 coding downstream 294068 37553378 ~ 37575457 (+)
G67373 NA non-coding upstream 203616 37011838 ~ 37030131 (+)
G67326 NA non-coding upstream 623953 36606597 ~ 36609794 (+)
G67263 NA non-coding upstream 975834 36257706 ~ 36257913 (+)
G67219 NA non-coding upstream 1104752 36120895 ~ 36128995 (+)
G67216 NA non-coding upstream 1137624 36094815 ~ 36096123 (+)
G67394 NA non-coding downstream 47930 37307240 ~ 37310186 (+)
G67522 NA non-coding downstream 85152 37344462 ~ 37345076 (+)
G67530 NA non-coding downstream 124278 37383588 ~ 37383822 (+)
G67563 NA non-coding downstream 218829 37478139 ~ 37478868 (+)
G67568 NA non-coding downstream 243392 37502702 ~ 37504728 (+)
trpm3 trpm3,LOC103470491,LOC103145554,LOC106928040,LOC101476865,LOC100708457 other upstream 741052 36241579 ~ 36492695 (+)
LOC120560081 NA other upstream 752436 36477798 ~ 36481311 (+)
G67152 NA other upstream 1210483 35871423 ~ 36023264 (+)
G67145 NA other upstream 1379586 35841534 ~ 35854161 (+)
G67146 NA other upstream 1381691 35840874 ~ 35852056 (+)
LOC120560165 LOC104964460,LOC103362321 other downstream 458593 37717903 ~ 37728705 (+)
si:ch211-214j8.12 NA other downstream 1050293 38309603 ~ 38323496 (+)
nkx6.3 nkx6-3,LOC102787307,LOC104940825,LOC102218504 other downstream 1096293 38355603 ~ 38407523 (+)
G67824 NA other downstream 1336501 38595811 ~ 38601821 (+)
G68023 NA other downstream 2150912 39410222 ~ 39461478 (+)

Expression


Co-expression Network