LOC120560121 (gfpt1,LOC104930651,LOC103362312)


Basic Information

Item Value
gene id LOC120560121
gene name gfpt1,LOC104930651,LOC103362312
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 37446217 ~ 37471801 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802304.1
TCTGAGTCAGTGTGGAGACAGAAGGGGCGAAGCTTTAACTGACAGGCGTTCCCCAGCTACCAGAGTAGCTGTAACTGGCATCCAAACTGCAGACATGTGTGGAATCTTTGCCTATCTCAACTACCAAGTGCCAAGGACTCGCCGGGAGATCCTTGAGATCCTGCTCAAAGGTCTGCACCGTCTGGAGTACAGAGGCTACGACTCAGCTGGTGTGGGAATTGATGGTGGCAATGGCAAGGACTGGGAGTCAAATGCCAAGTCCATCCACCTGATCAAGCAACGTGGGAAAGTGAAGGCTCTGGATGAGGAGATCAACAAGCAGCAGGATATGGACCTGGATGTGGAGTTTGACGTTCATGTCGGCATTGCTCACACCCGCTGGGCCACTCACGGTGTCCCAAGCCCAGTCAACAGCCACCCACATCGATCTGACAAGACCAACGAGTTCATCGTCATCCACAATGGAATTATCACCAACTACAAAGACCTGAGGAAGTTCTTGGAGAGCAAAGGCTACGAGTTTGAGTCAGAGACTGACACAGAGACCATCGCCAAGCTGGTGAAGTACATGTTTGACAACCGGGAGAGTGACGACATCAGTTTCGCCACGCTGGTGGAACGGGTCACCCAGCAGCTGGAGGGAGCTTTTGCCCTGGTGTTCAAGAGCGTCCACTACCCCGGAGAGGCAGTTGGCACAAGGAGGGGAAGTCCCCTGCTGATGGGAGTGAGGAGTGATCACAAACTGTCCTCCGATCATATTCCTGTGCTCTACCGCTCCACCGCTAAAGACAAGAAGGGCTGCAGTGCCATACCCAGGATGGACCAGGACACCTGCTTGTTCCCCGTGGATCAGAAAGCCGTGGAGTACTACTTTGCCTCTGATGCAAGCGCAGTGATCGAGCACACGAACCGGGTGATCTTCCTGGAGGACGACGACGTGGCTGCCGTGATGGAAGGCCGGCTGTCCATCCACAGGATAAAGCGCACGGCCGGAGACTACCCTGCCCGCGCCATCCAGACCCTGCAGATGGAGCTACAGCAGATCATGAAGGGCAACTACAGCTCCTTCATGCAGAAGGAGATCTTTGAGCAGCCCGAGTCTGTGGTCAATACCATGAGGGGGAGAATCAACTTCAACGACAACACAGTGATACTGGGTGGACTGAAGGACCACATCAAAGAGATCCAGAGGTGTCGGCGGCTGATCCTTATTGCCTGCGGCACCAGCTACCATGCCGGGGTAGCGACCCGCCAGGTCCTCGAAGAGCTAACCGAGCTGCCGGTCATGGTGGAGCTGGCCAGCGACTTCCTGGACAGGAACACTCCCGTCTTCCGAGACGACGTCTGCTTCTTCATCAGCCAGTCAGGGGAGACTGCTGACAGCCTCATGGCCCTGCGCTACTgcaaggagagaggagctctGACTGTGGGCGTCACCAACACAGTGGGCAGCTCCATCTCCAGGGAGACCGACTGCGGAGTCCACATCAATGCCGCGGAGATCGGCGTAGCCAGCACCAAGGCCTACACCAGCCAGTTTGTGGCCCTGATCATGTTTGCGCTCTTGATGTGCGATGACAGGATTTCCATGCAGCCCAGACGCCGAGAGATAATCCAGGGCCTGAGAGTGCTTCCAGATCTGATCAAGGAGGTCCTCAGTTTGGATGATGAGATCCAGAAGTTGGCAGAAGAGCTGTACCAGCAGAAGAGTGTACTGATCATGGGCAGAGGCTACCATTATGCTacctgcctggaaggagcactGAAAATTAAGGAAATCACATACATGCACTCAGAGGGCATCCTGGCTGGAGAGCTGAAACACGGCCCCCTGGCCCTGGTGGATAAACTCATGCCGGTCATCATGATCATCATGAGAGACCACACCTACACCAAATGTCAGAACGCACTGCAGCAAATTGTTGCCCGCCAGGGCCGCCCCATCGTGATCTGTGACAAAGATGATTACGAGACCGCCAAGTGCTCCAGCCGCACCATCAAAGTGCCTCACTGTGTGGACTGCCTGCAGGGCGTCCTGAGCGTCATCCCGCTGCAGCTGCTGTCCTTCCACCTGGCTGTCCTCCGAGGTTTCGACGTGGACTGTCCAAGGAACCTGGCCAAGTCCGTGACCGTAGAGTGAACCGCACCATTCATCACATAACGGCAAAAGCCCGGCGGACGCACATTCAAACGCGCACAGACGGCGAGGGAGCATCTGAATGCAGAAACGAAGAGAAAACAATGTCCTGTTTGTGTCTCGCgtcagggcttttttttttttttttttaaatgcaatctTTACTCAACAGGTGTGTATCTCACTGTTGCATAGTATCTGTATCTCACTGTCTATTTTTCCCAGAAACCTTTTGGCATCACTGTCGTACGATTGTTAGAGAAGCGGTTTTGTCCGTGGTGGCGAGGTCCGGCCTGGCGCTGACCTATCTTCATTACGCTCTGGGTTTGGGAAGCTGTAGCAACTGACCGTGACCATTTGGGTTCATTCACAATTCTCAAAAACTTTTGAGAAATGTTTTTGTGCCGATTAGTCTCGCTGGAAGCATCCTGGAGCTGCTGTTTAAGCCGTTGACTGACAGAAGTTTGGTTTTAAAGACCTTACTGGCTCTTTTTAGTGCAATGATTTGTAGTTTAgtttggatatttttttttccttggcaGCTAATCGTCTGAACGTAATCGACAATCTTAAATCATTCCAAGCCACAGGTCATCGCTTCTTCGTTAATTGCAGCGCACTTTGCCAGTTTTGCCTCGGTTTCTGTCTTGGACTTTCTTCTGAGGACACGGAGTTTACTGCAGGAGCAACGTCACAAGTTAGGTCCCAGAAACGCTCGCGAATACACTACTGTGCTGAAAATCTTCTTGTGTTGGTTACAAAAGCTTGTTCTTGTGTATAAACCTAGTGTTTAGCATTTCACGTTCTGGTCTTGATGGGCTCAGTTAACACGAATAAGACTTGTTTACTGAGCCACCATACGCTGTTTCTGCTTTTACCATTCTCTGTACATCATCCCTCTTACTTTAAAGCTATTATTTAGTGTTTGATTCTTCTGCGGATTCCAGATCTCGTTCACATTTAACCTATTAACTGAAGTAACTCTGAGATGAATTCACTAACCTGAAATACAAGTTGCACCCAGTTGCCAGCCCACACCTTGCCACCACGACTACTGCAATATTGGGACCATTTGTAGctattctttccttttttgttttgttttgttttttttaagggatTTGTATGTAATTGAAGTTACtctttggtttgaaatgtgaatgttactgtcatttgaaatGTCCTGTCAAACCAAAAATCTCTGCAATGGCATGTGGTTACATTTGTAAACCAAAACGTATATATTTTGTATGGTTATCCTACTGTATATTGTAGCTAAACGTGTACTGATGCTGGTAGATTTGTGCAGTACGAAGATGCTTCGAGTCCTAAAGGTAGAATATACAGTTTCATGGCAATATGTCATACTGCAGATGTCTATTTAGATAGAAAGTCAGATgccaactgtgtgtgtgatccCAAATGTCTGTTTCAAACACCAAGGAAAGAGTGATGTACACGTGCAGTTGTGTAGTGAAGAAATAgatgtggagtttttttttttttttaactcagatATTTTAGGTTACATATTTATCTTGCTTTTGCAATCAAGCCTTAACTTGacttttgcttttctttttcccccTTAAACATTGAGCTTCTCCTGAGCAAGTGAACAGGTTTAAATTAAAAACTGGATGTTTGTTACAGGTACTTTTTGTAACCCACATACATGCTGTAAGCACATTTTGATTTCTTAACTGGAGGCAATGAAAGGACACTGCACTGAATCCTAGCAACATCTGTTGAGTTACTGAGGAAGTGGGGCACTATTTATTAGTGGAACCGATGCAATAAAGTGTCAAAGTAC

Function

symbol description
gfpt1 Predicted to enable glutamine-fructose-6-phosphate transaminase (isomerizing) activity. Acts upstream of or within several processes, including melanocyte differentiation; neuromuscular junction development; and skeletal system development. Is expressed in notochord and polster. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 12 and obesity. Orthologous to human GFPT1 (glutamine--fructose-6-phosphate transaminase 1).

NR:

description
PREDICTED: glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1

GO: NA

KEGG:

id description
K00820 glmS, GFPT; glutamine---fructose-6-phosphate transaminase (isomerizing)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802304.1 True 3950 mRNA 0.49 20 37446217 37471801

Neighbor

gene id symbol gene type direction distance location
nfu1 nfu1,LOC103362311,LOC106520164,LOC100703913,LOC107393744 coding upstream 1876 37437882 ~ 37444341 (+)
med22 med22,LOC104930648 coding upstream 14107 37422456 ~ 37432110 (+)
LOC120560422 LOC103357666 coding upstream 24334 37388659 ~ 37421883 (+)
rab11fip1a rab11fip1 coding upstream 186907 37233747 ~ 37259310 (+)
adgra2 adgra2 coding upstream 214402 37160244 ~ 37231815 (+)
kansl3 kansl3,LOC102793526,LOC106579846 coding downstream 81577 37553378 ~ 37575457 (+)
bmp1a NA coding downstream 114049 37585850 ~ 37651905 (+)
LOC120560164 LOC104964460,LOC103362321 coding downstream 236410 37708211 ~ 37717629 (+)
acsl2 LOC104964461,LOC103362322 coding downstream 258025 37729826 ~ 37762215 (+)
ido1 LOC104931154 coding downstream 469118 37940919 ~ 37950699 (+)
G67530 NA non-coding upstream 62395 37383588 ~ 37383822 (+)
G67522 NA non-coding upstream 101141 37344462 ~ 37345076 (+)
G67394 NA non-coding upstream 136031 37307240 ~ 37310186 (+)
G67373 NA non-coding upstream 416086 37011838 ~ 37030131 (+)
G67326 NA non-coding upstream 836423 36606597 ~ 36609794 (+)
G67563 NA non-coding downstream 6338 37478139 ~ 37478868 (+)
G67568 NA non-coding downstream 30901 37502702 ~ 37504728 (+)
G67570 NA non-coding downstream 74111 37545912 ~ 37547224 (+)
G67572 NA non-coding downstream 103715 37575516 ~ 37576964 (+)
G67628 NA non-coding downstream 228713 37700514 ~ 37707458 (+)
trpm3 trpm3,LOC103470491,LOC103145554,LOC106928040,LOC101476865,LOC100708457 other upstream 953522 36241579 ~ 36492695 (+)
LOC120560081 NA other upstream 964906 36477798 ~ 36481311 (+)
G67152 NA other upstream 1422953 35871423 ~ 36023264 (+)
G67145 NA other upstream 1592056 35841534 ~ 35854161 (+)
G67146 NA other upstream 1594161 35840874 ~ 35852056 (+)
LOC120560165 LOC104964460,LOC103362321 other downstream 246102 37717903 ~ 37728705 (+)
si:ch211-214j8.12 NA other downstream 837802 38309603 ~ 38323496 (+)
nkx6.3 nkx6-3,LOC102787307,LOC104940825,LOC102218504 other downstream 883802 38355603 ~ 38407523 (+)
G67824 NA other downstream 1124010 38595811 ~ 38601821 (+)
G68023 NA other downstream 1938421 39410222 ~ 39461478 (+)

Expression


Co-expression Network