LOC120560164 (LOC104964460,LOC103362321)


Basic Information

Item Value
gene id LOC120560164
gene name LOC104964460,LOC103362321
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 37708211 ~ 37717629 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802386.1
GGTATAAGGAGATCAGCACCTGTCGGGGGGACTGTCTGCTGCCAGACAGGGACAAACATATTCAGGACAAGTGAGAAAGACTTCCACAGCGTCAGACAGGCTGCAGGTGGTAATGGGTACCCTTCGAGACCTCCAGTTTGCCCTGCAACTAAAGATTGAGGAGCTTCGCCAGAGGGACACACTAATAGATGAATTAGAGTTAGAGTTGGATACAAAGGATGAACTCATTCGGAGACTGCAGGAGGAACTGGATCGCTACAGAGCCACCGTCTCCCTCCCAGGATCCTCTGCAGCCAGTGCAGCATGCTCGGTTCAAAGTGAGGACTCACACAGAGCCAACAGGAAAACTGTGATTTCTGAGCCCTTCACTCTGGACCCGGTGACTCTCGCCATGGTTTCACACAGAAGCTGTGACAAAAGCCAGGAGTCCCAGAGGTTGATTGAGGCAGCCTTTTTGAAGAATGACTTGTTGAAGAACCTTGACGAGGGAGAAATCAGAGCCGTCATAGCCTGTATGTATCCCACCACCATCAATCAAGGCTGTTATGTCATCCAGGAGGGGGCCAATGGGACTCAGGCTTATGTTTTGGAAGAAGGGCTGCTGGATGTGACAAAAGACGGACTGAGGCTTCTCACAATTGAGCCAGAAGACATGTTCGGAGAGCTCGCTCTCCTCTACAACTGCTCCCACACCTACTCTGTCTcagCGCGAACGGACAGCAAGCTGTGGGTTCTTGACGGAAAAAGCTACCAGACCATACTTATGCAGAGCAGCCTCAACCgcctttctcattcaatggaGCTGCTCAGCAGcGTTCCCTTCCTCCAGTCTTTGCCTGAGGATAGCATCATGAAGATGTCTGATGTCATGGAGGAGacacactacaGTGAAGGTGACTACATCATTCGACAAGGAGCCACAGGAGACACCTTTTATATCATTAGCAAAGGCCAGGTAAAGATTGATGCTCTCTGCCTGCTGCACAGATGAAATGAGGCTTTCAGGGGGTGAAGAAAAAGATCTACATTGTAGAGGAAAAAATGTCAGCGGCAGAGTCAGAAATTGCTTTAAGATGGGGATGGTTGACTTTGAAGCTTTTTCTACATTGC

Function

NR:

description
PREDICTED: cGMP-dependent protein kinase 1-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004692 cGMP-dependent protein kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802386.1 True 1110 mRNA 0.50 8 37708211 37717629

Neighbor

gene id symbol gene type direction distance location
bmp1a NA coding upstream 56306 37585850 ~ 37651905 (+)
kansl3 kansl3,LOC102793526,LOC106579846 coding upstream 132754 37553378 ~ 37575457 (+)
LOC120560121 gfpt1,LOC104930651,LOC103362312 coding upstream 236410 37446217 ~ 37471801 (+)
nfu1 nfu1,LOC103362311,LOC106520164,LOC100703913,LOC107393744 coding upstream 263870 37437882 ~ 37444341 (+)
med22 med22,LOC104930648 coding upstream 276101 37422456 ~ 37432110 (+)
acsl2 LOC104964461,LOC103362322 coding downstream 12197 37729826 ~ 37762215 (+)
ido1 LOC104931154 coding downstream 223290 37940919 ~ 37950699 (+)
stc1 LOC103362328,LOC104965051 coding downstream 297746 38015375 ~ 38027047 (+)
nkx2.7 NA coding downstream 332710 38050339 ~ 38053972 (+)
nkx3-1 NA coding downstream 357437 38075066 ~ 38077900 (+)
G67628 NA non-coding upstream 753 37700514 ~ 37707458 (+)
G67572 NA non-coding upstream 131247 37575516 ~ 37576964 (+)
G67570 NA non-coding upstream 160987 37545912 ~ 37547224 (+)
G67568 NA non-coding upstream 203483 37502702 ~ 37504728 (+)
G67563 NA non-coding upstream 229343 37478139 ~ 37478868 (+)
G67639 bin3 non-coding downstream 50861 37768490 ~ 37781260 (+)
G67643 NA non-coding downstream 66045 37783674 ~ 37807644 (+)
G67661 NA non-coding downstream 105442 37823071 ~ 37823369 (+)
G67666 NA non-coding downstream 196004 37913633 ~ 37914035 (+)
G67669 NA non-coding downstream 204095 37921724 ~ 37936859 (+)
trpm3 trpm3,LOC103470491,LOC103145554,LOC106928040,LOC101476865,LOC100708457 other upstream 1215516 36241579 ~ 36492695 (+)
LOC120560081 NA other upstream 1226900 36477798 ~ 36481311 (+)
G67152 NA other upstream 1684947 35871423 ~ 36023264 (+)
G67145 NA other upstream 1854050 35841534 ~ 35854161 (+)
G67146 NA other upstream 1856155 35840874 ~ 35852056 (+)
LOC120560165 LOC104964460,LOC103362321 other downstream 274 37717903 ~ 37728705 (+)
si:ch211-214j8.12 NA other downstream 591974 38309603 ~ 38323496 (+)
nkx6.3 nkx6-3,LOC102787307,LOC104940825,LOC102218504 other downstream 637974 38355603 ~ 38407523 (+)
G67824 NA other downstream 878182 38595811 ~ 38601821 (+)
G68023 NA other downstream 1692593 39410222 ~ 39461478 (+)

Expression


Co-expression Network