nkx2.7


Basic Information

Item Value
gene id nkx2.7
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 38050339 ~ 38053972 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804515.1
ATGCATCCCAGTTCAGCCTCCGGATCGACGCCTTTCTCGGTGAAGGATATCTTGAAGCTGgagcaccaccaccaccaccaccaccaccaccttgaTGACTTTGAAAATGAATTTCATTTGATGACTGATCAAGTTGTTCCGATGAACTATCAGCACGTGCACGCGTGTGCGTCCCGGACCGTCCGGCCGGAGCCGCGCGTGCCCTGCCCGCAGGAGAGGCTCGATGTTCACAGCAGGGCGGCGGGAGAGGAAACACCGGAGCAGGAGATCAGCGGCCCAGAGAGTTCACCTGACTGTGACAGAAACTCCCCGAGCGGAGGCCCACCCAGCCGGCCGCGCAGGAAGCCACGCGTCCTCTTCTCCCAGACCCAGGTCTCCGAGCTGGAGCGGCGCTTTCGGCAGCAGCGCTACCTGTCCGCCCTGGAGAGAGAGCACCTGGCCCACATCCTCAAGCTCACCTCCACGCAGGTCAAGATCTGGTTCCAGAACAGGAGGTACAAATGCAAGCGACAGCGGCAGGACAAGTCTCTGGAGCTGGCGGGGTTTCCGGCCGCACCGAGGAGGGTGGCGGTGCCGGTGCTGGTGCGGGACGGCAGGCTCTGCGGCGCAGGTTCGCCTTCAACGGCGCCTTATAACGTGACCCTGGGACATTATAATTCTGTGTTGTATGGAAACAGCGGCGCGTACGGCTGCGGTTATCACTCTGTGTCGCCGTCAGCCGCACAGCTGGCTGATTTAACGTGTGGAAACAGTGAGGGGCCCTTTAACCACGGACACTTCCAGGCGTCTTTACAGGGGGTCAGAGGCTGGTGA

Function

NR:

description
homeobox protein Nkx-2.6

GO: NA

KEGG:

id description
K09346 NKX2-6; homeobox protein Nkx-2.6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804515.1 True 813 mRNA 0.61 2 38050339 38053972

Neighbor

gene id symbol gene type direction distance location
stc1 LOC103362328,LOC104965051 coding upstream 23292 38015375 ~ 38027047 (+)
ido1 LOC104931154 coding upstream 99640 37940919 ~ 37950699 (+)
acsl2 LOC104964461,LOC103362322 coding upstream 288124 37729826 ~ 37762215 (+)
LOC120560164 LOC104964460,LOC103362321 coding upstream 332710 37708211 ~ 37717629 (+)
bmp1a NA coding upstream 398434 37585850 ~ 37651905 (+)
nkx3-1 NA coding downstream 21094 38075066 ~ 38077900 (+)
c6h9orf85 csgr18h9orf85,clg9h9orf85,LOC105926787,LOC101078288,LOC103145608,LOC106963215,LOC102236857 coding downstream 194055 38248027 ~ 38258116 (+)
gda gda coding downstream 209395 38263367 ~ 38303966 (+)
trnaf-gaa_6 NA coding downstream 377620 38431592 ~ 38431664 (+)
LOC120560325 phyhip,LOC102233080,LOC104946538,LOC100707279 coding downstream 473768 38527740 ~ 38545362 (+)
G67697 NA non-coding upstream 35540 38014592 ~ 38014799 (+)
G67686 NA non-coding upstream 60802 37989246 ~ 37989537 (+)
G67669 NA non-coding upstream 113480 37921724 ~ 37936859 (+)
G67666 NA non-coding upstream 136304 37913633 ~ 37914035 (+)
G67661 NA non-coding upstream 226970 37823071 ~ 37823369 (+)
G67712 NA non-coding downstream 59068 38113040 ~ 38144615 (+)
G67713 NA non-coding downstream 60939 38114911 ~ 38146223 (+)
G67718 LOC104966820 non-coding downstream 122900 38176872 ~ 38180835 (+)
G67723 NA non-coding downstream 131918 38185890 ~ 38186960 (+)
G67722 NA non-coding downstream 149065 38203037 ~ 38203834 (+)
LOC120560165 LOC104964460,LOC103362321 other upstream 321634 37717903 ~ 37728705 (+)
trpm3 trpm3,LOC103470491,LOC103145554,LOC106928040,LOC101476865,LOC100708457 other upstream 1557644 36241579 ~ 36492695 (+)
LOC120560081 NA other upstream 1569028 36477798 ~ 36481311 (+)
G67152 NA other upstream 2027075 35871423 ~ 36023264 (+)
G67145 NA other upstream 2196178 35841534 ~ 35854161 (+)
si:ch211-214j8.12 NA other downstream 255631 38309603 ~ 38323496 (+)
nkx6.3 nkx6-3,LOC102787307,LOC104940825,LOC102218504 other downstream 301631 38355603 ~ 38407523 (+)
G67824 NA other downstream 541839 38595811 ~ 38601821 (+)
G68023 NA other downstream 1356250 39410222 ~ 39461478 (+)
LOC120560010 sds other downstream 1808491 39862463 ~ 39878496 (+)

Expression


Co-expression Network