LOC120560010 (sds)


Basic Information

Item Value
gene id LOC120560010
gene name sds
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 39862463 ~ 39878496 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU90974
ggtgcaatatgtaatactgacagctagtgtttaaaatagttactgcagtacaaattctaAATACTGGAGAGTGCTCCTTTTCACTTTCACTTATCTGTACAACACTTTGTTTATGCGAATGTCACTAACTtggaaaaaacaataaagagattgggaatatatatatatatatatatatatatatatatatatatataaatattggagagagtcgtctcccccaccccctcctccccagactcgaagttcacgttggctgccaggctgagaccgcagcatccacaacaatgtcgctagacgctagtctcacatagtcagacattactccacagcacagcaaagtagctaacgttagacgctagtctcacatagccagacattactccacagcacagcggagtagctaacgttagacggtagtctcacatagccagacattactccacagcacagcggagtagctaacgttagacggTAGTCTCACTtagtcagacattactccacagcacagcggagtagctaacgttagacgctagtctcacatagccagacattactccacagcacagcggagtagctaacgttagatgctagtctcacatagccagacattactccacagcacagcggagtagctaacgttagatgctagtctcccatagccagacattactccacagcacagcggagtagctaacgttagacgctagtctcacatagtcagacattactccacagcacagcggagtagctaacgttagatgctggctatgttgacagtcataaaatcccgtgctcacgcggagctctgtggCCAACTGAcagtatacagtaaatatattacatattggacctttaatgctTATTTATGCTTTCAACatttgatgatttttttgaGTGAGctgctttcttttcattttaaaaccttGTGATGATGACAGTACTCAGGTGGAGAACGTTTTCGACTAAAGACCtcttttagaaaaacaaaaacgtgAAATAAAGTACACAGATACATTTAGTTTGCATTTGCATTTTGCTTGCATATGGTTCTTTTGCTTTTGTac
>TU90977
ggtgcaatatgtaatactgacagctagtgtttaaaatagttactgcagtacaaattctaAATACTGGAGAGTGCTCCTTTTCACTTTCACTTATCTGTACAACACTTTGTTTATGCGAATGTCACTAACTtggaaaaaacaataaagagattgggaatatatatatatatatatatatatatatatatatatatataaatattggagagagtcgtctcccccaccccctcctccccagactcgaagttcacgttggctgccaggctgagaccgcagcatccacaacaatgtcgctagacgctagtctcacatagtcagacattactccacagcacagcaaagtagctaacgttagacgctagtctcacatattactccacagcacagcggagtagctaacgttagacgctagtctcacatagccagacattactccacagcacagcggagtagctaacgttagatgctagtctcacatagtcagacattactccacagcacagcggagtagctaacgttagatgctggctatgttgacagtcataaaatcccgtgctcacgcggagctctgtggCCAACTGAcagtatacagtaaatatattacatattggacctttaatgctTATTTATGCTTTCAACatttgatgatttttttgaGTGAGctgctttcttttcattttaaaaccttGTGATGATGACAGTACTCAGGTGGAGAACGTTTTCGACTAAAGACCtcttttagaaaaacaaaaacgtgAAATAAAGTACACAGATACATTTAGTTTGCATTTGCATTTTGCTTGCATATGGTTCTTTTGCTTTTGTac
>XM_039802099.1
TTTGCACTCCCGGCCAGTGGGAGGGTCCTGTGGCAGAATGCCTCGCTCTGATTGGTCCGCGAGTGGTCGAGCCCACAGCACCAGAGTGTATTTATGCACTGAAGATGCAGTAAGTTAGGAGCAGTGATTTCCAGCACAGCTTGTCACCCTGCCATCCATCTGACAACTGCGAGATGaagacccagcagcagcagctccacgTGGCCACTCCTCTGAGACAGAGCCTGGCCCTGACCAAAGTAGCCGGGACGTCCGTTTACCTCAAACTGGATTCATCTCAGCCCACAGGATCCTTTAAGATCCGGGGCATCGGACACCTCTGCAAAACGTGGGCAGAGCGAGGATGTGAACGCTTTGTCTGCTGTTCAGGAGGAAACGCTGGCATGGCAGCAGCTTATTCTGCCCGTCAGCTCGGGGTCCCTGCAACTATCGTCGTTCCAAGTGTTACACCGAGCCCGACGGTGGAGAGGCTGAAGGACGAGGGCGCCACTGTCATCATCCACGGCAAGGCTCTGAATGAAAGCATTGAATACGGACAGCAGCTCGTAGCAAACAACCCCGGCTGGATATTCATCTCTCCGTTCGACGATCCGCTCATCTGggAGGGCCACACGTCTCTGGTGGCGGAGCTGGAGAAGGAGCTGACGGAGAAGCCCGGAGCCGTGGTGCTGtcggtgggggggggagggctgCTGAACGGGGTGGTGGAGGGGCTGCGAAGAGCCCACTGGGCTGACGTGCCCGTCATCGCCATGGAAACCCTGGGAGCACACAGCCTCCACGCAGCCATGAAGGCCGGCGAGCTGGTCACGTTACAAATCACCAGtGTGGCGACCACGCTGGGCCTGACCAGGGTGTCTGCACAGACGTTTAAACTGGTGGGCGAGCACGCAGTTTTCTCTGAAGTCGTCACAGACCAGCAGGCTGTTCAAGCCGTTGAATGCTTCGTAGACGACGAAAAGGTTTTGGTGGAGCCGGCGTGCGGCGCCGCTCTGGCCGCCGTGTACAGCGGCGTCGTCCGACGGCTGCAGGCGGAGGGCAAGCTGGCGCCGCGTCTGGGCCCCGTGGTCGTCGTGGTGTGCGGAGGAAACAACATCAGCTTGGAGCAGCTGAGCAGGCTGAAGAAACAGCTGGGGATGATCTAGCCTAACCACTTCTGTAACTCCTGACACTTTCTTTACATTTCTGTTCCTTGGTCATCTTATAAACGCAACTATTCATTCCAGACTGTGAGACGCTCCTGAGCTCGGAGACTGACAGATTTTCCCGCTTTTTATTATgcgtttattattatttattattgacgcttttgatgctttttttttttgtgacagtttaaaggtgcaatatgtaatactgacagctagtgtttaaaatagttactgcagtacaaattctaAATACTGGAGAGTGCTCCTTTTCACTTTCACTTATCTGTACAACACTTTGTTTATGCGAATGTCACTAACTtggaaaaaacaataaagagattgggaatatatatatatatatatatatatat

Function

symbol description
sds Enables L-serine ammonia-lyase activity; protein homodimerization activity; and pyridoxal phosphate binding activity. Involved in L-serine catabolic process and pyruvate biosynthetic process. Located in cytosol and mitochondrion.

NR:

description
PREDICTED: L-serine dehydratase/L-threonine deaminase

GO: NA

KEGG:

id description
K17989 SDS, SDH, CHA1; L-serine/L-threonine ammonia-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
TU90974 False 1067 lncRNA 0.42 2 39877314 39878496
TU90977 False 827 lncRNA 0.39 3 39877314 39878496
XM_039802099.1 True 1522 mRNA 0.53 9 39862463 39877495

Neighbor

gene id symbol gene type direction distance location
LOC120560406 NA coding upstream 6726 39843146 ~ 39855737 (+)
LOC120561457 NA coding upstream 1024888 38832087 ~ 38837575 (+)
tgoln2 NA coding upstream 1034678 38816729 ~ 38827785 (+)
tcf7l1b tcf7l1,LOC107082304 coding upstream 1060747 38712285 ~ 38801716 (+)
si:dkey-31c13.1 NA coding upstream 1276167 38579413 ~ 38586296 (+)
adra1aa adra1a,LOC100708890,LOC102294828,LOC101475209 coding downstream 315172 40193668 ~ 40205536 (+)
igsf9b NA coding downstream 522119 40400615 ~ 40506486 (+)
zfand5a zfand5 coding downstream 655552 40534048 ~ 40556066 (+)
snrnp200 snrnp200 coding downstream 687574 40566070 ~ 40642169 (+)
tmem127 tmem127,LOC106585551 coding downstream 788829 40667325 ~ 40678275 (+)
G68094 NA non-coding upstream 16284 39794220 ~ 39846179 (+)
G68085 NA non-coding upstream 143767 39718070 ~ 39718696 (+)
G68084 NA non-coding upstream 159021 39703094 ~ 39703442 (+)
LOC120560408 NA non-coding upstream 259542 39596153 ~ 39602921 (+)
G68069 NA non-coding upstream 264209 39597793 ~ 39598254 (+)
G68106 NA non-coding downstream 4573 39883069 ~ 39883613 (+)
G68107 NA non-coding downstream 5280 39883776 ~ 39886482 (+)
G68141 NA non-coding downstream 144276 40022772 ~ 40041890 (+)
G68144 NA non-coding downstream 154577 40033073 ~ 40035391 (+)
G68163 NA non-coding downstream 264791 40143287 ~ 40143520 (+)
G68023 NA other upstream 400985 39410222 ~ 39461478 (+)
G67824 NA other upstream 1260642 38595811 ~ 38601821 (+)
nkx6.3 nkx6-3,LOC102787307,LOC104940825,LOC102218504 other upstream 1454940 38355603 ~ 38407523 (+)
si:ch211-214j8.12 NA other upstream 1538967 38309603 ~ 38323496 (+)
LOC120560165 LOC104964460,LOC103362321 other upstream 2133758 37717903 ~ 37728705 (+)
vps33a vps33a other downstream 255270 40133766 ~ 40164425 (+)
G68173 NA other downstream 354977 40233473 ~ 40234591 (+)
tmem230b tmem230,LOC101174675,LOC101077900,LOC105939206,LOC103146401,LOC102236919,LOC103356612,LOC107086812,LOC103399110,LOC103397697 other downstream 500899 40379395 ~ 40398123 (+)
G68285 NA other downstream 988751 40867247 ~ 40897108 (+)
trpm6 NA other downstream 1013233 40891729 ~ 40949978 (+)

Expression


Co-expression Network