tcf7l1b (tcf7l1,LOC107082304)


Basic Information

Item Value
gene id tcf7l1b
gene name tcf7l1,LOC107082304
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 38712285 ~ 38801716 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802709.1
TCAGGGCGCATTCCCCGGCAGCAATGTGGAGGGAAAGGGCGACTACATCCAGCTGAACATTTGATTTTTTATACGTTTGCAtcgtttttttcccctttcttcCTATTTTGTAAACTTTAGCGATTTTTAGCGCTTCTTTTGGGGGGGTAAAACAAGCGAGTGCCTGACCCTCtcgtgtttatttttttctgtattttttttttattttattttttataactcGAGCCATTGTTTTCTCACACATGGATATTAGGAGATGAAATCGGACGTGCGTCTTGTCGTTGCTTTCGCTTGAGTAACCCTCTCGGGACTAGTGTAGTTTATGTGGTCCCCGGGCTCCgtaggaggaggagaagagagtcCTATTCCTCGGCAGCGCAACCAGGAGAGACACGCAGGGGCCACAAGTTGTCCGCAGGCTGCGAAGGGACACCAAACTTTGCCAAGTTGCTGCGCATCCGGCCGCGGACGCCAAACActcgatatcgatatttttCGATCTCTGTCGCGACATTTAACTGTGTGGATTATCATCGCGATCGAGGCTCGTCATGGACTACTGGAGCCCGTTCACAGGATGAAAagggtgttttaaaaaaaaaaagcatcgaCACTTTCTTGCATTTAGCCTATAGTCCACTACTACGGCGGGGGACTCGTCTGGACTACACTGATctgataaagaaaagaaaagaaaagtcattTGTTATTGCGGTtgtcccccccctcctccctcttttgATATCTAACGTTATTCTGCAAAAATGCCACAGTTGAACGGAGGCGGTGGGGATGATTTGGGGGCCAATGATGAGATGATCTCGTTTAAAGACGAAGGGGAGCCGGAGGAAAAGATATCCGAGAATGTGTCAGCGGAAAGGGATTTGGATGATGTGAAATCCTCCTTAGTGAACGAGTCGGAAAACAACAGCAGCTCGTCGGACTCAGAGCAAGCAGAGAGGCGCCCCCAAACCAGACCCGACTTAGAAAGTTACGAGAAAGCGAGAGACTACTTCagtgaagCCCTAAGGAGGCAGCAAGATGGTGGCTTTTTTAAGAGTCCTCACTATCCTGGCTACCCGTTTCTCATGATCCCAGACCTCAGCAACCCGTACATATCCAACGGTTCACTGTCTCCGAGTGCAAGAACATACCTGCAGATGAAATGGCCTCTCTTGGACGTCCCTGGATCGGCAGGACTAAAAGACTCCCGTTCTCCAACGCCGGGGCATTTATCCAATAAAGTCCCCGTGGTGCAGCACGCCCACCACGTCCACCCTCTGACGCCCCTCATCACCTACAGCAATGAACACTTCTCCCCCGGCACGCCGCCGTCACACCTCTCCCCGGAGATCCTCGACCCAAAGACAGGTATTCCTCGGACGCCTCACCCGTCGGAGCTCTCTCCGTACTACCCGCTGTCTCCTGGCGCCGTCGGATCCATCGCACACCCTCTGGGCTGGTTCATGCAGCAGCAGGGCCAGCCCATGTACTCCATCCCTCCGGGGGGATTCCGTCACCCCTACCCAGCGCTGGCGATGAATGCATCCATGTCCAGCTTGGTGTCCAGCCGTTTCTCCCCCCACATGGTGACTCCGCCGCCGCACGGCCTCCACCAGACGGGCATCCCCCACCCGGCCATCGTGTCCCCGGCCATCAAACAGGAGCCCAGCGACATGAGCCCCTCCATGCATGCCAGGAAATCGCCCGTTCCTCCCAAGAAAGAAGAGGACAAGAGGCCTCACATCAAGAAGCCCCTGAATGCTTTCATGCTGTACATGAAGGAGATGAGAGCCAAAGTGGTGGCCGAGTGCACGCTGAAGGAGAGCGCCGCCATCAACCAGATCCTCGGCAGACGGTGGCATTCCCTGTCCCGAGAGGAACAGGCCAAATACTACGAGCTGGCCAGAAAGGAGAGGCAACTGCACTCGCAGCTCTACCCGGGCTGGTCCGCACGAGACAACTATGGAAAGcggaaaaagaggaagagagacaatAAACCCGACTCGAAACCAGAAGACTTCTCCATCCGGAGCAAGAAGCAGTGCGTGCAGTACCTGCCCTCGGAGAAGATGTGCGACAGCCCGGCGTCGTCCCACGGCAGCATGCTGGACTCGCCGGCCACGCCCTCGGCCGCCCTGGCCTCGCCGGCCGCGCCGGCCGCCACGCACTCGGAGCAGGCACAGCCGCTGTCGCTCACCACCAAGCCGGAGGGGCGCATGCACCACCACCACTTCTCCCTGGCCGGCAAGGCTTCTGGATccacatcttcttcttcttcttcttcctcttcttcttcctcctcctcccatctctcCATCCCCATTGGTTCTTCAGGTAGCCATTCGACCACGCCCATCCTCAGCCGGCCAATCCCCTTCAGCTCTCTGCACCCCTCCATGCTCTCCCCCCCTTCCCCTTTCCATCAGGCGGCCCTTCACTCCCATCACGCCCTGTTCCAGTCGCAGCCCCTCTCCTTGGTTACCAAACAATCCGACTGAGTGAATTTggagacgaaaaaaaaaaacgccattTTTGTCCCCGCGTGTTGTGCtgtatattgcttttctttacgaaaaaaaaaataggtattagaactgctttttttcaacaacaaaaattaaaaattaaaaaataacgaAAAGGAAGAAAATATTATTGGTCAATATTTgactgtctctttttctccatctctcaatgaaaacaaaatgtatttttttgtaaagtTTTACCGCAGAActggtttcttttcttttcgttTTGATGATGATGCATTTATCCAAATGAACCTCTTGTATAAAAGAACCATTGTACATAACGtttctttatataaaaaaaaaaaaaaaaaaaaaa
>XM_039802710.1
TCAGGGCGCATTCCCCGGCAGCAATGTGGAGGGAAAGGGCGACTACATCCAGCTGAACATTTGATTTTTTATACGTTTGCAtcgtttttttcccctttcttcCTATTTTGTAAACTTTAGCGATTTTTAGCGCTTCTTTTGGGGGGGTAAAACAAGCGAGTGCCTGACCCTCtcgtgtttatttttttctgtattttttttttattttattttttataactcGAGCCATTGTTTTCTCACACATGGATATTAGGAGATGAAATCGGACGTGCGTCTTGTCGTTGCTTTCGCTTGAGTAACCCTCTCGGGACTAGTGTAGTTTATGTGGTCCCCGGGCTCCgtaggaggaggagaagagagtcCTATTCCTCGGCAGCGCAACCAGGAGAGACACGCAGGGGCCACAAGTTGTCCGCAGGCTGCGAAGGGACACCAAACTTTGCCAAGTTGCTGCGCATCCGGCCGCGGACGCCAAACActcgatatcgatatttttCGATCTCTGTCGCGACATTTAACTGTGTGGATTATCATCGCGATCGAGGCTCGTCATGGACTACTGGAGCCCGTTCACAGGATGAAAagggtgttttaaaaaaaaaaagcatcgaCACTTTCTTGCATTTAGCCTATAGTCCACTACTACGGCGGGGGACTCGTCTGGACTACACTGATctgataaagaaaagaaaagaaaagtcattTGTTATTGCGGTtgtcccccccctcctccctcttttgATATCTAACGTTATTCTGCAAAAATGCCACAGTTGAACGGAGGCGGTGGGGATGATTTGGGGGCCAATGATGAGATGATCTCGTTTAAAGACGAAGGGGAGCCGGAGGAAAAGATATCCGAGAATGTGTCAGCGGAAAGGGATTTGGATGATGTGAAATCCTCCTTAGTGAACGAGTCGGAAAACAACAGCAGCTCGTCGGACTCAGAGCAAGCAGAGAGGCGCCCCCAAACCAGACCCGACTTAGAAAGTTACGAGAAAGCGAGAGACTACTTCagtgaagCCCTAAGGAGGCAGCAAGATGGTGGCTTTTTTAAGAGTCCTCACTATCCTGGCTACCCGTTTCTCATGATCCCAGACCTCAGCAACCCGTACATATCCAACGGTTCACTGTCTCCGAGTGCAAGAACATACCTGCAGATGAAATGGCCTCTCTTGGACGTCCCTGGATCGGCAGGACTAAAAGACTCCCGTTCTCCAACGCCGGGGCATTTATCCAATAAAGTCCCCGTGGTGCAGCACGCCCACCACGTCCACCCTCTGACGCCCCTCATCACCTACAGCAATGAACACTTCTCCCCCGGCACGCCGCCGTCACACCTCTCCCCGGAGATCCTCGACCCAAAGACAGGTATTCCTCGGACGCCTCACCCGTCGGAGCTCTCTCCGTACTACCCGCTGTCTCCTGGCGCCGTCGGATCCATCGCACACCCTCTGGGCTGGTTCATGCAGCAGCAGGGCCAGCCCATGTACTCCATCCCTCCGGGGGGATTCCGTCACCCCTACCCAGCGCTGGCGATGAATGCATCCATGTCCAGCTTGGTGTCCAGCCGTTTCTCCCCCCACATGGTGACTCCGCCGCCGCACGGCCTCCACCAGACGGGCATCCCCCACCCGGCCATCGTGTCCCCGGCCATCAAACAGGAGCCCAGCGACATGAGCCCCTCCATGCATGCGAAATCGCCCGTTCCTCCCAAGAAAGAAGAGGACAAGAGGCCTCACATCAAGAAGCCCCTGAATGCTTTCATGCTGTACATGAAGGAGATGAGAGCCAAAGTGGTGGCCGAGTGCACGCTGAAGGAGAGCGCCGCCATCAACCAGATCCTCGGCAGACGGTGGCATTCCCTGTCCCGAGAGGAACAGGCCAAATACTACGAGCTGGCCAGAAAGGAGAGGCAACTGCACTCGCAGCTCTACCCGGGCTGGTCCGCACGAGACAACTATGGAAAGcggaaaaagaggaagagagacaatAAACCCGACTCGAAACCAGAAGACTTCTCCATCCGGAGCAAGAAGCAGTGCGTGCAGTACCTGCCCTCGGAGAAGATGTGCGACAGCCCGGCGTCGTCCCACGGCAGCATGCTGGACTCGCCGGCCACGCCCTCGGCCGCCCTGGCCTCGCCGGCCGCGCCGGCCGCCACGCACTCGGAGCAGGCACAGCCGCTGTCGCTCACCACCAAGCCGGAGGGGCGCATGCACCACCACCACTTCTCCCTGGCCGGCAAGGCTTCTGGATccacatcttcttcttcttcttcttcctcttcttcttcctcctcctcccatctctcCATCCCCATTGGTTCTTCAGGTAGCCATTCGACCACGCCCATCCTCAGCCGGCCAATCCCCTTCAGCTCTCTGCACCCCTCCATGCTCTCCCCCCCTTCCCCTTTCCATCAGGCGGCCCTTCACTCCCATCACGCCCTGTTCCAGTCGCAGCCCCTCTCCTTGGTTACCAAACAATCCGACTGAGTGAATTTggagacgaaaaaaaaaaacgccattTTTGTCCCCGCGTGTTGTGCtgtatattgcttttctttacgaaaaaaaaaataggtattagaactgctttttttcaacaacaaaaattaaaaattaaaaaataacgaAAAGGAAGAAAATATTATTGGTCAATATTTgactgtctctttttctccatctctcaatgaaaacaaaatgtatttttttgtaaagtTTTACCGCAGAActggtttcttttcttttcgttTTGATGATGATGCATTTATCCAAATGAACCTCTTGTATAAAAGAACCATTGTACATAACGtttctttatataaaaaaaaaaaaaaaaaaaaaa

Function

symbol description
tcf7l1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in canonical Wnt signaling pathway and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including axial mesoderm morphogenesis; regulation of transcription, DNA-templated; and somatic stem cell population maintenance. Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: transcription factor 7-like 1 isoform X1

GO: NA

KEGG:

id description
K04490 TCF7L1; transcription factor 7-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802709.1 True 2853 mRNA 0.52 12 38712285 38801716
XM_039802710.1 False 2850 mRNA 0.52 12 38712285 38801716

Neighbor

gene id symbol gene type direction distance location
si:dkey-31c13.1 NA coding upstream 125989 38579413 ~ 38586296 (+)
LOC120560325 phyhip,LOC102233080,LOC104946538,LOC100707279 coding upstream 166923 38527740 ~ 38545362 (+)
trnaf-gaa_6 NA coding upstream 280621 38431592 ~ 38431664 (+)
gda gda coding upstream 408319 38263367 ~ 38303966 (+)
c6h9orf85 csgr18h9orf85,clg9h9orf85,LOC105926787,LOC101078288,LOC103145608,LOC106963215,LOC102236857 coding upstream 454169 38248027 ~ 38258116 (+)
tgoln2 NA coding downstream 15013 38816729 ~ 38827785 (+)
LOC120561457 NA coding downstream 30371 38832087 ~ 38837575 (+)
LOC120560406 NA coding downstream 1041430 39843146 ~ 39855737 (+)
adra1aa adra1a,LOC100708890,LOC102294828,LOC101475209 coding downstream 1391952 40193668 ~ 40205536 (+)
igsf9b NA coding downstream 1598899 40400615 ~ 40506486 (+)
G67838 LOC104946535,LOC103470542,LOC101482088,LOC107393720,LOC101172587,LOC106915872 non-coding upstream 41628 38658604 ~ 38670657 (+)
G67836 dbnl non-coding upstream 54766 38641275 ~ 38657519 (+)
G67830 NA non-coding upstream 56088 38633771 ~ 38656197 (+)
G67766 NA non-coding upstream 198269 38422361 ~ 38514016 (+)
G67793 NA non-coding upstream 211614 38499850 ~ 38500671 (+)
LOC120560859 NA non-coding downstream 47600 38849316 ~ 38859183 (+)
G67984 NA non-coding downstream 125945 38927661 ~ 38927937 (+)
G67985 NA non-coding downstream 138679 38940395 ~ 38940672 (+)
G67989 NA non-coding downstream 219967 39021683 ~ 39023137 (+)
G67991 NA non-coding downstream 326866 39128582 ~ 39129287 (+)
G67824 NA other upstream 110464 38595811 ~ 38601821 (+)
nkx6.3 nkx6-3,LOC102787307,LOC104940825,LOC102218504 other upstream 304762 38355603 ~ 38407523 (+)
si:ch211-214j8.12 NA other upstream 388789 38309603 ~ 38323496 (+)
LOC120560165 LOC104964460,LOC103362321 other upstream 983580 37717903 ~ 37728705 (+)
trpm3 trpm3,LOC103470491,LOC103145554,LOC106928040,LOC101476865,LOC100708457 other upstream 2219590 36241579 ~ 36492695 (+)
G68023 NA other downstream 608506 39410222 ~ 39461478 (+)
LOC120560010 sds other downstream 1060747 39862463 ~ 39878496 (+)
vps33a vps33a other downstream 1332050 40133766 ~ 40164425 (+)
G68173 NA other downstream 1431757 40233473 ~ 40234591 (+)
tmem230b tmem230,LOC101174675,LOC101077900,LOC105939206,LOC103146401,LOC102236919,LOC103356612,LOC107086812,LOC103399110,LOC103397697 other downstream 1577679 40379395 ~ 40398123 (+)

Expression


Co-expression Network