vps33a (vps33a)


Basic Information

Item Value
gene id vps33a
gene name vps33a
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 40133766 ~ 40164425 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU91051
gttgctgctgcagaaACATGGCGGCCCACCTGTCCTACGGTCGCGtcaatttaaacattttgagAGAAGCAGCACGGAAAGAGCTTCGAGAGTTTTTGGACAAATGTGCAGGAAGCAAGGCCATAGTTTGGGATGAATATCTGACGGGACCTTTTGGATTGATAGCTCAGTACTCTCTGCTGAAGGAACATGAAGTGGAGAAGATGTTCACCCTCAAGAGTGGCCGGCTGCCCTCTGCTGACGTCAAAAACATCATCTTCTTCGTCCGTCCCCGACTGGAGCTCATGGACATCATTGCTGAGAACGTATTCAGCGAGGACAAGATGCACTCGCCTCGAGACTTCCACATCTTGTTCGTGCCGCGGCGCAGCATGCTGTGTGAGCAGCGGCTGAAGGAGCAGGGCGTGCTGGCCTCTTTCATCAACATCGACGAGTACATCCTGGACCTGATTCCCTACGACGGAGACCTGCTCTCCATGGAGTATGAAAGCGCTTTCAGGGAGTGCTACTTAGAAAATGACCAAACAAGCCTTTACCACACAGCCAAAGGCCTCATGACCTTACAGGCGCTGTATGGCACCATTCCCCAGATATACGG
>TU91053
TGCCAACATGATGCTGAGGATGAAGCGGGAGTTTGCCGGCAGTCAGAACCAGATCCTGCCCGTGTTCGACACTCTGCTCCTCCTGGACCGTAACGTGGATCTGCTCACCCCTCTGGCCACGCAGCTCACCTACGAGGGCCTCATCGACGAGATCTACGGAATCACTAACGGTTATGTCAAGCTGCCTCCTGAGAAGTTTGCACAGAAGAAGCAAGGCGAGGCGAGTAAAGATTTGCCCACAGAGCCCAAGAAGATGCAGCTCAACTCCGCGGAGGAGCTGTACGCAGAAATACGAGACAAGAACTTCAACGCTGTCGGAGCGGCTCTCAGCAAGAAGGCCAAAATCATTTCAGCAGCCTTTGAGGAGCGCCATAACGCTAAGACAGTGGGAGAAATCAAGCAGTTTGTGTCCCAGCTGCCCCACATGCAGGCGGCTCGCAGCTCGCTGGCCAATCACACGTCTATCGCCGAGCTCATCAAGGACATCACCACGTCTGAGGCCTTCTTCGATAATCTGACGGTGGAGCAGGAGTTTATGACCGGAGTGGACACAgacaaggtaca
>XM_039804519.1
CCCCCACTGGTCACCTGACttgttgtgttgctgctgcagaaACATGGCGGCCCACCTGTCCTACGGTCGCGtcaatttaaacattttgagAGAAGCAGCACGGAAAGAGCTTCGAGAGTTTTTGGACAAATGTGCAGGAAGCAAGGCCATAGTTTGGGATGAATATCTGACGGGACCTTTTGGATTGATAGCTCAGTACTCTCTGCTGAAGGAACATGAAGTGGAGAAGATGTTCACCCTCAAGAGTGGCCGGCTGCCCTCTGCTGACGTCAAAAACATCATCTTCTTCGTCCGTCCCCGACTGGAGCTCATGGACATCATTGCTGAGAACGTATTCAGCGAGGACAAGATGCACTCGCCTCGAGACTTCCACATCTTGTTCGTGCCGCGGCGCAGCATGCTGTGTGAGCAGCGGCTGAAGGAGCAGGGCGTGCTGGCCTCTTTCATCAACATCGACGAGTACATCCTGGACCTGATTCCCTACGACGGAGACCTGCTCTCCATGGAGTATGAAAGCGCTTTCAGGGAGTGCTACTTAGAAAATGACCAAACAAGCCTTTACCACACAGCCAAAGGCCTCATGACCTTACAGGCGCTGTATGGCACCATTCCCCAGATATACGGAaaaGCCTCTGCTTGTCAGCACGTTGCCAACATGATGCTGAGGATGAAGCGGGAGTTTGCCGGCAGTCAGAACCAGATCCTGCCCGTGTTCGACACTCTGCTCCTCCTGGACCGTAACGTGGATCTGCTCACCCCTCTGGCCACGCAGCTCACCTACGAGGGCCTCATCGACGAGATCTACGGAATCACTAACGGTTATGTCAAGCTGCCTCCTGAGAAGTTTGCACAGAAGAAGCAAGGCGAGGCGAGTAAAGATTTGCCCACAGAGCCCAAGAAGATGCAGCTCAACTCCGCGGAGGAGCTGTACGCAGAAATACGAGACAAGAACTTCAACGCTGTCGGAGCGGCTCTCAGCAAGAAGGCCAAAATCATTTCAGCAGCCTTTGAGGAGCGCCATAACGCTAAGACAGTGGGAGAAATCAAGCAGTTTGTGTCCCAGCTGCCCCACATGCAGGCGGCTCGCAGCTCGCTGGCCAATCACACGTCTATCGCCGAGCTCATCAAGGACATCACCACGTCTGAGGCCTTCTTCGATAATCTGACGGTGGAGCAGGAGTTTATGACCGGAGTGGACACAgacaaggtacacacacacaTAACCCCCTgtattgactctgaggaccccctgttgaagatccctggtttAGACTCAATCAGATGTCCAtccaatgaggggagaaaggaaaAGATCCTCCAGGTAAAGTCACACTACTATAAGAGAGAGATCCTCCAGACGTACGGGTACGAACACATCCTGACGCTCAACAACCTGGAGAAGGCCGGGCTCCTGAAGCTGCAGAGCAGCACCAGGAACAACTACCCCACCATCAGGAAAACTCTCAAACTGTGGATGGAGGACGCCAACGAACAGAACCCCAACGACATCTCGTACGTGTACAGCGGCTACGCCCCGCTGAGCGTGCGGCTGGCGCAGGTCTTGGCCCGGCCCGGCTGGCGGAGCATCGAGGAGGTTCTGAAGATGCTCCCGGGACCGCACTTCGAGGAGAGGCAGCAGCTGCCCGCCGGGCTGCACAAGAAACGTCAGCAGGGGGAGAACCGGACGACGCTGGTGTTCTTCCTCGGCGGAGTGTCCTACGCAGAAATAGCCGCTCTGCGTTTCCTCTCTCAGATGGAAGACAGCGGGATGGAGTATATCATAGCGACCACCAAACTGCTGAACGGTACCACCTGGATCAAATCCCTCATGGACCGGCCCGAGTCCCAGGGCTCCTGAGTCACCTGCTCGCACACCTGCACACATCAGAGACTCGATGCAGCCGCCAGAAGGCCCTCAgctgctgtctgtctgaccctggtggtgtgtgtgtgtgtgtgtctgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtctgtgtctctgacccTGGTGGTGAACTGCAGCTGGGATTGATGTCGGGGCATCagccagctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtctgtgtgtctgtgtctctgacccTGGTGGTGAACTGCAGCTGGGATTGATGTCGGGGCATCagccagctctgtgtgtgtgtgtgtgtgtttctgtctgtctgtctttgtttgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

symbol description
vps33a Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to act upstream of or within protein transport and vesicle docking involved in exocytosis. Predicted to be located in late endosome membrane and lysosomal membrane. Predicted to be part of CORVET complex. Predicted to be active in lysosome. Orthologous to human VPS33A (VPS33A core subunit of CORVET and HOPS complexes).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 33A

GO: NA

KEGG:

id description
K20182 VPS33A; vacuolar protein sorting-associated protein 33A

RNA

RNA id representative length rna type GC content exon number start site end site
TU91051 False 598 TUCP 0.52 5 40133792 40142482
TU91053 False 564 TUCP 0.55 4 40144759 40150677
XM_039804519.1 True 2419 mRNA 0.55 15 40133766 40164425

Neighbor

gene id symbol gene type direction distance location
LOC120560406 NA coding upstream 278029 39843146 ~ 39855737 (+)
LOC120561457 NA coding upstream 1296191 38832087 ~ 38837575 (+)
tgoln2 NA coding upstream 1305981 38816729 ~ 38827785 (+)
tcf7l1b tcf7l1,LOC107082304 coding upstream 1332050 38712285 ~ 38801716 (+)
si:dkey-31c13.1 NA coding upstream 1547470 38579413 ~ 38586296 (+)
adra1aa adra1a,LOC100708890,LOC102294828,LOC101475209 coding downstream 29243 40193668 ~ 40205536 (+)
igsf9b NA coding downstream 236190 40400615 ~ 40506486 (+)
zfand5a zfand5 coding downstream 369623 40534048 ~ 40556066 (+)
snrnp200 snrnp200 coding downstream 401645 40566070 ~ 40642169 (+)
tmem127 tmem127,LOC106585551 coding downstream 502900 40667325 ~ 40678275 (+)
G68141 NA non-coding upstream 91876 40022772 ~ 40041890 (+)
G68144 NA non-coding upstream 98375 40033073 ~ 40035391 (+)
G68107 NA non-coding upstream 247284 39883776 ~ 39886482 (+)
G68106 NA non-coding upstream 250153 39883069 ~ 39883613 (+)
G68094 NA non-coding upstream 287587 39794220 ~ 39846179 (+)
G68165 NA non-coding downstream 21221 40185646 ~ 40186050 (+)
G68171 NA non-coding downstream 48597 40213022 ~ 40303307 (+)
G68180 NA non-coding downstream 105276 40269701 ~ 40373042 (+)
G68151 NA non-coding downstream 106619 40271044 ~ 40276811 (+)
G68183 LOC103356614,LOC100711031,LOC102193827,LOC102292245,LOC104961739,LOC101477054 non-coding downstream 121030 40285455 ~ 40291669 (+)
LOC120560010 sds other upstream 255270 39862463 ~ 39878496 (+)
G68023 NA other upstream 672288 39410222 ~ 39461478 (+)
G67824 NA other upstream 1531945 38595811 ~ 38601821 (+)
nkx6.3 nkx6-3,LOC102787307,LOC104940825,LOC102218504 other upstream 1726243 38355603 ~ 38407523 (+)
si:ch211-214j8.12 NA other upstream 1810270 38309603 ~ 38323496 (+)
G68173 NA other downstream 69048 40233473 ~ 40234591 (+)
tmem230b tmem230,LOC101174675,LOC101077900,LOC105939206,LOC103146401,LOC102236919,LOC103356612,LOC107086812,LOC103399110,LOC103397697 other downstream 214970 40379395 ~ 40398123 (+)
G68285 NA other downstream 702822 40867247 ~ 40897108 (+)
trpm6 NA other downstream 727304 40891729 ~ 40949978 (+)
G68309 NA other downstream 819399 40983824 ~ 41070649 (+)

Expression


Co-expression Network