RNA id: TU91051


Basic Information

Item Value
RNA id TU91051
length 598
RNA type TUCP
GC content 0.52
exon number 5
gene id vps33a
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 40133766 ~ 40164425 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttgctgctgcagaaACATGGCGGCCCACCTGTCCTACGGTCGCGtcaatttaaacattttgagAGAAGCAGCACGGAAAGAGCTTCGAGAGTTTTTGGACAAATGTGCAGGAAGCAAGGCCATAGTTTGGGATGAATATCTGACGGGACCTTTTGGATTGATAGCTCAGTACTCTCTGCTGAAGGAACATGAAGTGGAGAAGATGTTCACCCTCAAGAGTGGCCGGCTGCCCTCTGCTGACGTCAAAAACATCATCTTCTTCGTCCGTCCCCGACTGGAGCTCATGGACATCATTGCTGAGAACGTATTCAGCGAGGACAAGATGCACTCGCCTCGAGACTTCCACATCTTGTTCGTGCCGCGGCGCAGCATGCTGTGTGAGCAGCGGCTGAAGGAGCAGGGCGTGCTGGCCTCTTTCATCAACATCGACGAGTACATCCTGGACCTGATTCCCTACGACGGAGACCTGCTCTCCATGGAGTATGAAAGCGCTTTCAGGGAGTGCTACTTAGAAAATGACCAAACAAGCCTTTACCACACAGCCAAAGGCCTCATGACCTTACAGGCGCTGTATGGCACCATTCCCCAGATATACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91022 lncRNA upstream 91902 40022772 ~ 40041890 (+) True G68141
TU91026 lncRNA upstream 98401 40033073 ~ 40035391 (+) True G68144
TU90987 lncRNA upstream 247310 39883776 ~ 39886482 (+) True G68107
TU90986 lncRNA upstream 250179 39883069 ~ 39883613 (+) True G68106
TU90974 lncRNA upstream 255296 39877314 ~ 39878496 (+) False LOC120560010
TU91052 lncRNA downstream 805 40143287 ~ 40143520 (+) True G68163
TU91056 lncRNA downstream 43164 40185646 ~ 40186050 (+) True G68165
TU91062 lncRNA downstream 70540 40213022 ~ 40303307 (+) True G68171
TU91072 lncRNA downstream 127219 40269701 ~ 40373042 (+) False G68180
TU91073 lncRNA downstream 127219 40269701 ~ 40373042 (+) False G68180
XM_039802099.1 mRNA upstream 256297 39862463 ~ 39877495 (+) True LOC120560010
XM_039802871.1 mRNA upstream 278055 39843146 ~ 39855737 (+) True LOC120560406
XM_039804598.1 mRNA upstream 1296217 38832087 ~ 38837575 (+) True LOC120561457
XM_039802713.1 mRNA upstream 1306007 38816729 ~ 38827785 (+) True tgoln2
XM_039802712.1 mRNA upstream 1306390 38816729 ~ 38827402 (+) False tgoln2
XM_039804552.1 mRNA downstream 51186 40193668 ~ 40205536 (+) True adra1aa
XM_039802032.1 mRNA downstream 236913 40379395 ~ 40398123 (+) True tmem230b
XM_039804050.1 mRNA downstream 258133 40400615 ~ 40506486 (+) True igsf9b
XM_039804393.1 mRNA downstream 391566 40534048 ~ 40556066 (+) True zfand5a
XM_039804394.1 mRNA downstream 391566 40534048 ~ 40556066 (+) False zfand5a
TU90882 other upstream 719811 39410238 ~ 39413981 (+) True G68023
TU90883 other upstream 719811 39410238 ~ 39413981 (+) False G68023
TU90637 other upstream 1535319 38595811 ~ 38598473 (+) False G67824
unassigned_transcript_271 other upstream 1702128 38431592 ~ 38431664 (+) True trnaf-gaa_6
TU90566 other upstream 1726269 38361472 ~ 38407523 (+) False nkx6.3
TU91053 other downstream 2277 40144759 ~ 40150677 (+) False vps33a
TU91064 other downstream 90991 40233473 ~ 40234591 (+) True G68173
TU91093 other downstream 236935 40379417 ~ 40382450 (+) False tmem230b
TU91208 other downstream 724765 40867247 ~ 40897108 (+) True G68285
TU91230 other downstream 802051 40944533 ~ 40949978 (+) False trpm6

Expression Profile