RNA id: TU90986


Basic Information

Item Value
RNA id TU90986
length 545
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G68106
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 39883069 ~ 39883613 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACACAGAGATCTCAAATGCCATCCGATTCTTTACATCTGTATAATCCATTTTTAGATATGTTACGTTTCTGATGTGCAGAGGTAAGACAGTAAAAGTTAAGTTAATGCAAccataaataattgtaataaatatCAAGTCAATGTACATACAGCACACGTTTTTATCGCAACACCTCTTTGTATGGATaagtcctttattttttttttataaccttCTCCACCCCCACCTCGCCGCCCGGAGGAGGAAGTAGAGGAGAGGAGCGTCCCCCGTTAGCAGCGGTATGTCACCTTTCAAAAAAACAACTCAACCAAAGATCGCAAAGCAACGCAACAATCCCGGTATGCGTCAGATTATTCCGATTCGGTCGTGGATTTTCAGTAAAATGGCGATTTTACTCACACAAGAAAACAGGTTTCACCATGAGTAAGACTGAATCCATCTGAGTACAAGACAAAAAGGTGATTATGAGTACTGGTTGTTTccaaaaaaaattcataaaaaaaattaacaccaCAACAAACCGGATATCCAACAGACATCGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90974 lncRNA upstream 4573 39877314 ~ 39878496 (+) False LOC120560010
TU90977 lncRNA upstream 4573 39877314 ~ 39878496 (+) False LOC120560010
TU90967 lncRNA upstream 36890 39794220 ~ 39846179 (+) True G68094
TU90957 lncRNA upstream 164373 39718070 ~ 39718696 (+) True G68085
TU90956 lncRNA upstream 179627 39703094 ~ 39703442 (+) True G68084
TU90987 lncRNA downstream 163 39883776 ~ 39886482 (+) True G68107
TU91022 lncRNA downstream 139159 40022772 ~ 40041890 (+) True G68141
TU91026 lncRNA downstream 149460 40033073 ~ 40035391 (+) True G68144
TU91052 lncRNA downstream 259674 40143287 ~ 40143520 (+) True G68163
TU91056 lncRNA downstream 302033 40185646 ~ 40186050 (+) True G68165
XM_039802099.1 mRNA upstream 5574 39862463 ~ 39877495 (+) True LOC120560010
XM_039802871.1 mRNA upstream 27332 39843146 ~ 39855737 (+) True LOC120560406
XM_039804598.1 mRNA upstream 1045494 38832087 ~ 38837575 (+) True LOC120561457
XM_039802713.1 mRNA upstream 1055284 38816729 ~ 38827785 (+) True tgoln2
XM_039802712.1 mRNA upstream 1055667 38816729 ~ 38827402 (+) False tgoln2
XM_039804519.1 mRNA downstream 250153 40133766 ~ 40164425 (+) True vps33a
XM_039804552.1 mRNA downstream 310055 40193668 ~ 40205536 (+) True adra1aa
XM_039802032.1 mRNA downstream 495782 40379395 ~ 40398123 (+) True tmem230b
XM_039804050.1 mRNA downstream 517002 40400615 ~ 40506486 (+) True igsf9b
XM_039804393.1 mRNA downstream 650435 40534048 ~ 40556066 (+) True zfand5a
TU90882 other upstream 469088 39410238 ~ 39413981 (+) True G68023
TU90883 other upstream 469088 39410238 ~ 39413981 (+) False G68023
TU90637 other upstream 1284596 38595811 ~ 38598473 (+) False G67824
unassigned_transcript_271 other upstream 1451405 38431592 ~ 38431664 (+) True trnaf-gaa_6
TU90566 other upstream 1475546 38361472 ~ 38407523 (+) False nkx6.3
TU91051 other downstream 250179 40133792 ~ 40142482 (+) False vps33a
TU91053 other downstream 261146 40144759 ~ 40150677 (+) False vps33a
TU91064 other downstream 349860 40233473 ~ 40234591 (+) True G68173
TU91093 other downstream 495804 40379417 ~ 40382450 (+) False tmem230b
TU91208 other downstream 983634 40867247 ~ 40897108 (+) True G68285

Expression Profile