RNA id: TU91052


Basic Information

Item Value
RNA id TU91052
length 234
lncRNA type intronic
GC content 0.47
exon number 1
gene id G68163
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 40143287 ~ 40143520 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acagagacatggggtctggtggtctattcttatatactgtctatgggggagactccttaaacctgcattatatctgacttcctgcagggggagactccttaaacctgcattatatctgacttcctgcagggggagactccttaaacctgcattatatctgacttcctgctgggggagactccttaaacctgcattatatctgacttcctgcagggggagactccttaaacctgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91022 lncRNA upstream 101397 40022772 ~ 40041890 (+) True G68141
TU91026 lncRNA upstream 107896 40033073 ~ 40035391 (+) True G68144
TU90987 lncRNA upstream 256805 39883776 ~ 39886482 (+) True G68107
TU90986 lncRNA upstream 259674 39883069 ~ 39883613 (+) True G68106
TU90974 lncRNA upstream 264791 39877314 ~ 39878496 (+) False LOC120560010
TU91056 lncRNA downstream 42126 40185646 ~ 40186050 (+) True G68165
TU91062 lncRNA downstream 69502 40213022 ~ 40303307 (+) True G68171
TU91072 lncRNA downstream 126181 40269701 ~ 40373042 (+) False G68180
TU91073 lncRNA downstream 126181 40269701 ~ 40373042 (+) False G68180
TU91076 lncRNA downstream 126181 40269701 ~ 40373042 (+) False G68180
XM_039802099.1 mRNA upstream 265792 39862463 ~ 39877495 (+) True LOC120560010
XM_039802871.1 mRNA upstream 287550 39843146 ~ 39855737 (+) True LOC120560406
XM_039804598.1 mRNA upstream 1305712 38832087 ~ 38837575 (+) True LOC120561457
XM_039802713.1 mRNA upstream 1315502 38816729 ~ 38827785 (+) True tgoln2
XM_039804552.1 mRNA downstream 50148 40193668 ~ 40205536 (+) True adra1aa
XM_039802032.1 mRNA downstream 235875 40379395 ~ 40398123 (+) True tmem230b
XM_039804050.1 mRNA downstream 257095 40400615 ~ 40506486 (+) True igsf9b
XM_039804393.1 mRNA downstream 390528 40534048 ~ 40556066 (+) True zfand5a
XM_039804394.1 mRNA downstream 390528 40534048 ~ 40556066 (+) False zfand5a
TU91051 other upstream 805 40133792 ~ 40142482 (+) False vps33a
TU90882 other upstream 729306 39410238 ~ 39413981 (+) True G68023
TU90883 other upstream 729306 39410238 ~ 39413981 (+) False G68023
TU90637 other upstream 1544814 38595811 ~ 38598473 (+) False G67824
unassigned_transcript_271 other upstream 1711623 38431592 ~ 38431664 (+) True trnaf-gaa_6
TU91053 other downstream 1239 40144759 ~ 40150677 (+) False vps33a
TU91064 other downstream 89953 40233473 ~ 40234591 (+) True G68173
TU91093 other downstream 235897 40379417 ~ 40382450 (+) False tmem230b
TU91208 other downstream 723727 40867247 ~ 40897108 (+) True G68285
TU91230 other downstream 801013 40944533 ~ 40949978 (+) False trpm6

Expression Profile