RNA id: XM_039802871.1


Basic Information

Item Value
RNA id XM_039802871.1
length 2230
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC120560406
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 39843146 ~ 39855737 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aggaccaggctagtgtaccagagtatggtaggaccaggctaatggaccagagtctggtaggaccaggctatgaATAATATGCATTGACAACTggtcatttttaaaaacaaactgccacgGAATGTTCTGTCTTTAGAATGGAATTAATATTCAGTTACAATGACTCAAAAATCCAGAATTCATCGTGTAAAACTTCAGCTGAAAACATTTCAGGGACTGCAAACCAAGTTAGTTGATGTCTATGTAAAAGACACGTGTATGTTAAAGAAGAGACGATGAACCGCGCCAGGGAAAAAGTAGATTACAGTAAAATGCCATCACGCTCAGCCAGCCGTTTGAGAGCAGACAAAAGAGcTGTCGCAGGTGAAACGAAGACATCGAAGAACCATGAGccccaCCGTGAGGTGCGAAGGAGAGACGTGCTGTGCAGCCGCACATGTTACTACCGCATTCAGGACTTCATCGGAGAAGGATGCTTTGGCAAAGTTGCCAAGTGTGTGAACTTAGTCACATCACAGGATGTAGCCATCAAGATCCTAAAATCTGAGAATAGCGAGGACGTTGAAGAAGAGATCAAAATGCTCAAAGCGGTGAGCGCTCTTGACCCAGTCAAGAAGAACGTGGCGCAGTTCCTCGAAATGTTTAAACACAAAGGACAAACCTGTCTCGCTTTCGAAATGTTAGACAGAAATCTTCATCAACTGTTGAGGGAGAGACGCTACAAGCCGCTGTCCCTCAGTGAGATACGACCGATAGCACAGCAGTTGCTGACGGCCTTTGACGCTCTGAAAGGCATCGGTGTGGTTCACTCGGACCTGAAGCCGGACAACGTAATGCTGACTAACCACCAGGGCGAGCCCTTCAGGGTGAAACTAATAGATTTCGGGGTGTCCTTCCCCACCTCAAAGGAGCATCGTGGACATACAATCCAACCTCTGGGTTACAGGGCACCAGAAGTCTTCCTGGGTCTCCCCGTCTCCGAGGCCATAGACATGTGGAGTCTCGGCTGTGTGCTCTTCTGGCTGTACGTCGCCGAACACCTGTTTCCAGGTCACTTCCAGTACCAGTCTATGAGAGGCATCGTTGAAATACTGGGACAGCCGGCTGACCACCTTCTCCGTGCCGGATACTTCACCCACAAGTTCTTTACGATGAACCAGAAAACAAACTACCCAAAATGGTGGCTAAAGACTCCAGGCGAGTACGAGCTTTACAACGACAGAGATCCTGGAGAATGGGACAGGTCTTTTAACAGACTGGATGACCTGATAACAGTAGACATCGAGCAACCTGTTGAACTGGAGGACCAAAGAGCTTTTGTGAGCCTCCTGAAATCTCTTCTACAAATGGACTCGAAGAAGAGGATGGTTCCGGAGAAGGCTATCACGCACCCATTTGTTACAATGGCCCATCTGATGGATGAGACGGACATGAGCGAGTATGTGAACGAGTCCTTTCACAAAATGCTGGTGTGTCCAATGGATTACGCAGAAGAGGAACGCCCATCTGACGACGAGGCAGATGAAGAGAGCAAAGGTGAAGGGCCTTCAGCCAGAACTCGTACCAATGGCACAGGCTTAGCTTCTAGCCACAGGGCGGACAGTACATCTGACGGGTTTCCTGATGAAGCGAAGAAGAGCCCGCTCCAGAAATTCTTCAGCAGGGCAGACAGTACATCTGACGGGATTCCTGTTAAAGCGAAGAAGAGCCCGCTGAAGAGAGCCCAGAAATTCTTCAGCAGAGCAGCCAGTACATCTGACGAGTTTCCTGATGAAGCGTTGAAGAGCCCGCTGAAGAGAATCCAGAAATTCTTCAGCAGAGCAGCCAGTACATCTGATGAGTTTCCTGATGAAGCGAAGAAGAACCCGCTGAAGAGAATCCAGAAATTCTTCAGCAGAGCATCCAGTACATCTGACGGGTTTCCTGATGAAGCGAAGAAGAGCCCGCTGAAGAGAATCCGGAAATTCTTCAGCAGAGCAGCAAGGACCTTGcttggaaagaaaaaaattttGAATGTTACTTGTGTTGCAGAGTAAATGATGTGTGCATACACAGTAGTGCAGCAGATTAGTAAAAAGATACTCTCTAAGGGccactattttagaaaaaggcATTGGCCACTCAAAAATTCAATATGCTAATATTGCTATTCAATAGAGAGctgaagtcccgccccttccggtggacctcatgggacctaaactcagaaaaaatatgaacaatagtgaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90957 lncRNA upstream 124450 39718070 ~ 39718696 (+) True G68085
TU90956 lncRNA upstream 139704 39703094 ~ 39703442 (+) True G68084
XR_005639480.1 lncRNA upstream 240225 39596153 ~ 39602921 (+) True LOC120560408
TU90941 lncRNA upstream 244892 39597793 ~ 39598254 (+) True G68069
TU90934 lncRNA upstream 269377 39572822 ~ 39573769 (+) True G68064
TU90974 lncRNA downstream 21577 39877314 ~ 39878496 (+) False LOC120560010
TU90977 lncRNA downstream 21577 39877314 ~ 39878496 (+) False LOC120560010
TU90986 lncRNA downstream 27332 39883069 ~ 39883613 (+) True G68106
TU90987 lncRNA downstream 28039 39883776 ~ 39886482 (+) True G68107
TU91022 lncRNA downstream 167035 40022772 ~ 40041890 (+) True G68141
XM_039804598.1 mRNA upstream 1005571 38832087 ~ 38837575 (+) True LOC120561457
XM_039802713.1 mRNA upstream 1015361 38816729 ~ 38827785 (+) True tgoln2
XM_039802712.1 mRNA upstream 1015744 38816729 ~ 38827402 (+) False tgoln2
XM_039802709.1 mRNA upstream 1041430 38712285 ~ 38801716 (+) True tcf7l1b
XM_039802710.1 mRNA upstream 1041430 38712285 ~ 38801716 (+) False tcf7l1b
XM_039802099.1 mRNA downstream 6726 39862463 ~ 39877495 (+) True LOC120560010
XM_039804519.1 mRNA downstream 278029 40133766 ~ 40164425 (+) True vps33a
XM_039804552.1 mRNA downstream 337931 40193668 ~ 40205536 (+) True adra1aa
XM_039802032.1 mRNA downstream 523658 40379395 ~ 40398123 (+) True tmem230b
XM_039804050.1 mRNA downstream 544878 40400615 ~ 40506486 (+) True igsf9b
TU90882 other upstream 429165 39410238 ~ 39413981 (+) True G68023
TU90883 other upstream 429165 39410238 ~ 39413981 (+) False G68023
TU90637 other upstream 1244673 38595811 ~ 38598473 (+) False G67824
unassigned_transcript_271 other upstream 1411482 38431592 ~ 38431664 (+) True trnaf-gaa_6
TU90566 other upstream 1435623 38361472 ~ 38407523 (+) False nkx6.3
TU91051 other downstream 278055 40133792 ~ 40142482 (+) False vps33a
TU91053 other downstream 289022 40144759 ~ 40150677 (+) False vps33a
TU91064 other downstream 377736 40233473 ~ 40234591 (+) True G68173
TU91093 other downstream 523680 40379417 ~ 40382450 (+) False tmem230b
TU91208 other downstream 1011510 40867247 ~ 40897108 (+) True G68285

Expression Profile