RNA id: XR_005639480.1


Basic Information

Item Value
RNA id XR_005639480.1
length 839
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id LOC120560408
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 39596153 ~ 39602921 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCCCAGTCGGGGATGACAGAGCAATCACTCTTCCCCAGCTCGGCCTTCTTTTctgttttcctcttttttctttttcttttttagctcTGCGTCTTTACGGATGATTATCCCGGTCAGTTTCAGGCAGATTTATTAGTGACACCGAGTCTGCTGGTCAGCTTCAGGCAACTGGCCAACACTGGAATTGCCTttccttgttgtttttttgctgcgTCGTGCCCTAAAGAGCCACAAGAGAGACTTTCTTCACTGGTTGTTAGAAGACGAGCGAGcgagcaagcaagcaagcatccCAAAGATCCAGCCGACCTGACAGAATGAGGGAGACGATTTGTAAGAGCTGGACTCAAAATGACGAAGGCCACCGATCACCTTTTGGTCCTGTAGTTGGAGCCAGGAATGGATAGAAGACCAAGATCTAAGGATGTGAGTGGGAgtggagttgggttgggaacgaGGTCATGTAATGCTCTGGAGGTAATCAACAGGATCTTGTACTGTATGCTGAATCCCAACGGAAGACTAAGGAGTGATGCAAGAAGTCTGCTGGTCAGCTACAGGCAACGGGCCAACACTACAACtacctctctcttcttcttcttcttcggttTTATTTGTGTTGTGCCGTAAAGAGCCACAACAGAGCTTCTCTTCCCTGGTAGTCTGGAGATGAGAGGAGATCCCATGAAGGGCTCCTTCACTGAGCCAGtctGTAGACCGCTCACTGGAAATCCCGTCCGAATCAACATCCTGTCCCCGGCCTCTAGGAAGTGACCTCAGCTTCAGATAAAGCCTCCGCATCAAAAACATCAGGCCAGCCTTAATAATGAGCTCTGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90934 lncRNA upstream 22384 39572822 ~ 39573769 (+) True G68064
TU90902 lncRNA upstream 125138 39470444 ~ 39471015 (+) True G68038
TU90903 lncRNA upstream 125138 39470444 ~ 39471015 (+) False G68038
TU90884 lncRNA upstream 134675 39410222 ~ 39461478 (+) False G68023
TU90875 lncRNA upstream 237282 39358662 ~ 39358871 (+) True G68017
TU90956 lncRNA downstream 100173 39703094 ~ 39703442 (+) True G68084
TU90957 lncRNA downstream 115149 39718070 ~ 39718696 (+) True G68085
TU90967 lncRNA downstream 191299 39794220 ~ 39846179 (+) True G68094
TU90974 lncRNA downstream 274393 39877314 ~ 39878496 (+) False LOC120560010
TU90977 lncRNA downstream 274393 39877314 ~ 39878496 (+) False LOC120560010
XM_039804598.1 mRNA upstream 758578 38832087 ~ 38837575 (+) True LOC120561457
XM_039802713.1 mRNA upstream 768368 38816729 ~ 38827785 (+) True tgoln2
XM_039802712.1 mRNA upstream 768751 38816729 ~ 38827402 (+) False tgoln2
XM_039802709.1 mRNA upstream 794437 38712285 ~ 38801716 (+) True tcf7l1b
XM_039802871.1 mRNA downstream 240225 39843146 ~ 39855737 (+) True LOC120560406
XM_039802099.1 mRNA downstream 259542 39862463 ~ 39877495 (+) True LOC120560010
XM_039804519.1 mRNA downstream 530845 40133766 ~ 40164425 (+) True vps33a
XM_039804552.1 mRNA downstream 590747 40193668 ~ 40205536 (+) True adra1aa
XM_039802032.1 mRNA downstream 776474 40379395 ~ 40398123 (+) True tmem230b
TU90882 other upstream 182172 39410238 ~ 39413981 (+) True G68023
TU90883 other upstream 182172 39410238 ~ 39413981 (+) False G68023
TU90637 other upstream 997680 38595811 ~ 38598473 (+) False G67824
unassigned_transcript_271 other upstream 1164489 38431592 ~ 38431664 (+) True trnaf-gaa_6
TU90566 other upstream 1188630 38361472 ~ 38407523 (+) False nkx6.3
TU91051 other downstream 530871 40133792 ~ 40142482 (+) False vps33a
TU91053 other downstream 541838 40144759 ~ 40150677 (+) False vps33a
TU91064 other downstream 630552 40233473 ~ 40234591 (+) True G68173
TU91093 other downstream 776496 40379417 ~ 40382450 (+) False tmem230b
TU91208 other downstream 1264326 40867247 ~ 40897108 (+) True G68285

Expression Profile