RNA id: TU90967


Basic Information

Item Value
RNA id TU90967
length 210
lncRNA type sense_over
GC content 0.41
exon number 3
gene id G68094
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 39794220 ~ 39846179 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgtcattgacataatgcattccctagccccttaccctaaccttaaccatcaccactaaatgcctaaccttaacccttaccctaaccttaaccatcacaactaaatgcctaaccttaacccttaccctcaccctaaccataacctaattctatccctaatcctaaaaccaagtcttaacccttaccctcaccttaaccataacctaattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90957 lncRNA upstream 75524 39718070 ~ 39718696 (+) True G68085
TU90956 lncRNA upstream 90778 39703094 ~ 39703442 (+) True G68084
XR_005639480.1 lncRNA upstream 191299 39596153 ~ 39602921 (+) True LOC120560408
TU90941 lncRNA upstream 195966 39597793 ~ 39598254 (+) True G68069
TU90934 lncRNA upstream 220451 39572822 ~ 39573769 (+) True G68064
TU90974 lncRNA downstream 31135 39877314 ~ 39878496 (+) False LOC120560010
TU90977 lncRNA downstream 31135 39877314 ~ 39878496 (+) False LOC120560010
TU90986 lncRNA downstream 36890 39883069 ~ 39883613 (+) True G68106
TU90987 lncRNA downstream 37597 39883776 ~ 39886482 (+) True G68107
TU91022 lncRNA downstream 176593 40022772 ~ 40041890 (+) True G68141
XM_039804598.1 mRNA upstream 956645 38832087 ~ 38837575 (+) True LOC120561457
XM_039802713.1 mRNA upstream 966435 38816729 ~ 38827785 (+) True tgoln2
XM_039802712.1 mRNA upstream 966818 38816729 ~ 38827402 (+) False tgoln2
XM_039802709.1 mRNA upstream 992504 38712285 ~ 38801716 (+) True tcf7l1b
XM_039802099.1 mRNA downstream 16284 39862463 ~ 39877495 (+) True LOC120560010
XM_039804519.1 mRNA downstream 287587 40133766 ~ 40164425 (+) True vps33a
XM_039804552.1 mRNA downstream 347489 40193668 ~ 40205536 (+) True adra1aa
XM_039802032.1 mRNA downstream 533216 40379395 ~ 40398123 (+) True tmem230b
XM_039804050.1 mRNA downstream 554436 40400615 ~ 40506486 (+) True igsf9b
TU90882 other upstream 380239 39410238 ~ 39413981 (+) True G68023
TU90883 other upstream 380239 39410238 ~ 39413981 (+) False G68023
TU90637 other upstream 1195747 38595811 ~ 38598473 (+) False G67824
unassigned_transcript_271 other upstream 1362556 38431592 ~ 38431664 (+) True trnaf-gaa_6
TU90566 other upstream 1386697 38361472 ~ 38407523 (+) False nkx6.3
TU91051 other downstream 287613 40133792 ~ 40142482 (+) False vps33a
TU91053 other downstream 298580 40144759 ~ 40150677 (+) False vps33a
TU91064 other downstream 387294 40233473 ~ 40234591 (+) True G68173
TU91093 other downstream 533238 40379417 ~ 40382450 (+) False tmem230b
TU91208 other downstream 1021068 40867247 ~ 40897108 (+) True G68285

Expression Profile