RNA id: TU90934


Basic Information

Item Value
RNA id TU90934
length 398
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G68064
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 39572822 ~ 39573769 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agctacagacacagaaatggcacatcctaaggaaagctcattgtgggactggctctagtggctgtaattctgcaccaaggctgaatttcgggaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaagggctatataaaagagacttcagatacagtattagggggaccactaaggtctctataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggcctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagcatccaaagagcaccatgtcatggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90902 lncRNA upstream 101807 39470444 ~ 39471015 (+) True G68038
TU90903 lncRNA upstream 101807 39470444 ~ 39471015 (+) False G68038
TU90884 lncRNA upstream 111344 39410222 ~ 39461478 (+) False G68023
TU90875 lncRNA upstream 213951 39358662 ~ 39358871 (+) True G68017
TU90846 lncRNA upstream 443535 39128582 ~ 39129287 (+) True G67991
XR_005639480.1 lncRNA downstream 22384 39596153 ~ 39602921 (+) True LOC120560408
TU90941 lncRNA downstream 24024 39597793 ~ 39598254 (+) True G68069
TU90956 lncRNA downstream 129325 39703094 ~ 39703442 (+) True G68084
TU90957 lncRNA downstream 144301 39718070 ~ 39718696 (+) True G68085
TU90967 lncRNA downstream 220451 39794220 ~ 39846179 (+) True G68094
XM_039804598.1 mRNA upstream 735247 38832087 ~ 38837575 (+) True LOC120561457
XM_039802713.1 mRNA upstream 745037 38816729 ~ 38827785 (+) True tgoln2
XM_039802712.1 mRNA upstream 745420 38816729 ~ 38827402 (+) False tgoln2
XM_039802709.1 mRNA upstream 771106 38712285 ~ 38801716 (+) True tcf7l1b
XM_039802871.1 mRNA downstream 269377 39843146 ~ 39855737 (+) True LOC120560406
XM_039802099.1 mRNA downstream 288694 39862463 ~ 39877495 (+) True LOC120560010
XM_039804519.1 mRNA downstream 559997 40133766 ~ 40164425 (+) True vps33a
XM_039804552.1 mRNA downstream 619899 40193668 ~ 40205536 (+) True adra1aa
XM_039802032.1 mRNA downstream 805626 40379395 ~ 40398123 (+) True tmem230b
TU90882 other upstream 158841 39410238 ~ 39413981 (+) True G68023
TU90883 other upstream 158841 39410238 ~ 39413981 (+) False G68023
TU90637 other upstream 974349 38595811 ~ 38598473 (+) False G67824
unassigned_transcript_271 other upstream 1141158 38431592 ~ 38431664 (+) True trnaf-gaa_6
TU90566 other upstream 1165299 38361472 ~ 38407523 (+) False nkx6.3
TU91051 other downstream 560023 40133792 ~ 40142482 (+) False vps33a
TU91053 other downstream 570990 40144759 ~ 40150677 (+) False vps33a
TU91064 other downstream 659704 40233473 ~ 40234591 (+) True G68173
TU91093 other downstream 805648 40379417 ~ 40382450 (+) False tmem230b
TU91208 other downstream 1293478 40867247 ~ 40897108 (+) True G68285

Expression Profile