LOC120560406


Basic Information

Item Value
gene id LOC120560406
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 39843146 ~ 39855737 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802871.1
aggaccaggctagtgtaccagagtatggtaggaccaggctaatggaccagagtctggtaggaccaggctatgaATAATATGCATTGACAACTggtcatttttaaaaacaaactgccacgGAATGTTCTGTCTTTAGAATGGAATTAATATTCAGTTACAATGACTCAAAAATCCAGAATTCATCGTGTAAAACTTCAGCTGAAAACATTTCAGGGACTGCAAACCAAGTTAGTTGATGTCTATGTAAAAGACACGTGTATGTTAAAGAAGAGACGATGAACCGCGCCAGGGAAAAAGTAGATTACAGTAAAATGCCATCACGCTCAGCCAGCCGTTTGAGAGCAGACAAAAGAGcTGTCGCAGGTGAAACGAAGACATCGAAGAACCATGAGccccaCCGTGAGGTGCGAAGGAGAGACGTGCTGTGCAGCCGCACATGTTACTACCGCATTCAGGACTTCATCGGAGAAGGATGCTTTGGCAAAGTTGCCAAGTGTGTGAACTTAGTCACATCACAGGATGTAGCCATCAAGATCCTAAAATCTGAGAATAGCGAGGACGTTGAAGAAGAGATCAAAATGCTCAAAGCGGTGAGCGCTCTTGACCCAGTCAAGAAGAACGTGGCGCAGTTCCTCGAAATGTTTAAACACAAAGGACAAACCTGTCTCGCTTTCGAAATGTTAGACAGAAATCTTCATCAACTGTTGAGGGAGAGACGCTACAAGCCGCTGTCCCTCAGTGAGATACGACCGATAGCACAGCAGTTGCTGACGGCCTTTGACGCTCTGAAAGGCATCGGTGTGGTTCACTCGGACCTGAAGCCGGACAACGTAATGCTGACTAACCACCAGGGCGAGCCCTTCAGGGTGAAACTAATAGATTTCGGGGTGTCCTTCCCCACCTCAAAGGAGCATCGTGGACATACAATCCAACCTCTGGGTTACAGGGCACCAGAAGTCTTCCTGGGTCTCCCCGTCTCCGAGGCCATAGACATGTGGAGTCTCGGCTGTGTGCTCTTCTGGCTGTACGTCGCCGAACACCTGTTTCCAGGTCACTTCCAGTACCAGTCTATGAGAGGCATCGTTGAAATACTGGGACAGCCGGCTGACCACCTTCTCCGTGCCGGATACTTCACCCACAAGTTCTTTACGATGAACCAGAAAACAAACTACCCAAAATGGTGGCTAAAGACTCCAGGCGAGTACGAGCTTTACAACGACAGAGATCCTGGAGAATGGGACAGGTCTTTTAACAGACTGGATGACCTGATAACAGTAGACATCGAGCAACCTGTTGAACTGGAGGACCAAAGAGCTTTTGTGAGCCTCCTGAAATCTCTTCTACAAATGGACTCGAAGAAGAGGATGGTTCCGGAGAAGGCTATCACGCACCCATTTGTTACAATGGCCCATCTGATGGATGAGACGGACATGAGCGAGTATGTGAACGAGTCCTTTCACAAAATGCTGGTGTGTCCAATGGATTACGCAGAAGAGGAACGCCCATCTGACGACGAGGCAGATGAAGAGAGCAAAGGTGAAGGGCCTTCAGCCAGAACTCGTACCAATGGCACAGGCTTAGCTTCTAGCCACAGGGCGGACAGTACATCTGACGGGTTTCCTGATGAAGCGAAGAAGAGCCCGCTCCAGAAATTCTTCAGCAGGGCAGACAGTACATCTGACGGGATTCCTGTTAAAGCGAAGAAGAGCCCGCTGAAGAGAGCCCAGAAATTCTTCAGCAGAGCAGCCAGTACATCTGACGAGTTTCCTGATGAAGCGTTGAAGAGCCCGCTGAAGAGAATCCAGAAATTCTTCAGCAGAGCAGCCAGTACATCTGATGAGTTTCCTGATGAAGCGAAGAAGAACCCGCTGAAGAGAATCCAGAAATTCTTCAGCAGAGCATCCAGTACATCTGACGGGTTTCCTGATGAAGCGAAGAAGAGCCCGCTGAAGAGAATCCGGAAATTCTTCAGCAGAGCAGCAAGGACCTTGcttggaaagaaaaaaattttGAATGTTACTTGTGTTGCAGAGTAAATGATGTGTGCATACACAGTAGTGCAGCAGATTAGTAAAAAGATACTCTCTAAGGGccactattttagaaaaaggcATTGGCCACTCAAAAATTCAATATGCTAATATTGCTATTCAATAGAGAGctgaagtcccgccccttccggtggacctcatgggacctaaactcagaaaaaatatgaacaatagtgaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802871.1 True 2230 mRNA 0.48 10 39843146 39855737

Neighbor

gene id symbol gene type direction distance location
LOC120561457 NA coding upstream 1005571 38832087 ~ 38837575 (+)
tgoln2 NA coding upstream 1015361 38816729 ~ 38827785 (+)
tcf7l1b tcf7l1,LOC107082304 coding upstream 1041430 38712285 ~ 38801716 (+)
si:dkey-31c13.1 NA coding upstream 1256850 38579413 ~ 38586296 (+)
LOC120560325 phyhip,LOC102233080,LOC104946538,LOC100707279 coding upstream 1297784 38527740 ~ 38545362 (+)
adra1aa adra1a,LOC100708890,LOC102294828,LOC101475209 coding downstream 337931 40193668 ~ 40205536 (+)
igsf9b NA coding downstream 544878 40400615 ~ 40506486 (+)
zfand5a zfand5 coding downstream 678311 40534048 ~ 40556066 (+)
snrnp200 snrnp200 coding downstream 710333 40566070 ~ 40642169 (+)
tmem127 tmem127,LOC106585551 coding downstream 811588 40667325 ~ 40678275 (+)
G68085 NA non-coding upstream 124450 39718070 ~ 39718696 (+)
G68084 NA non-coding upstream 139704 39703094 ~ 39703442 (+)
LOC120560408 NA non-coding upstream 240225 39596153 ~ 39602921 (+)
G68069 NA non-coding upstream 244892 39597793 ~ 39598254 (+)
G68064 NA non-coding upstream 269377 39572822 ~ 39573769 (+)
G68106 NA non-coding downstream 27332 39883069 ~ 39883613 (+)
G68107 NA non-coding downstream 28039 39883776 ~ 39886482 (+)
G68141 NA non-coding downstream 167035 40022772 ~ 40041890 (+)
G68144 NA non-coding downstream 177336 40033073 ~ 40035391 (+)
G68163 NA non-coding downstream 287550 40143287 ~ 40143520 (+)
G68023 NA other upstream 381668 39410222 ~ 39461478 (+)
G67824 NA other upstream 1241325 38595811 ~ 38601821 (+)
nkx6.3 nkx6-3,LOC102787307,LOC104940825,LOC102218504 other upstream 1435623 38355603 ~ 38407523 (+)
si:ch211-214j8.12 NA other upstream 1519650 38309603 ~ 38323496 (+)
LOC120560165 LOC104964460,LOC103362321 other upstream 2114441 37717903 ~ 37728705 (+)
LOC120560010 sds other downstream 6726 39862463 ~ 39878496 (+)
vps33a vps33a other downstream 278029 40133766 ~ 40164425 (+)
G68173 NA other downstream 377736 40233473 ~ 40234591 (+)
tmem230b tmem230,LOC101174675,LOC101077900,LOC105939206,LOC103146401,LOC102236919,LOC103356612,LOC107086812,LOC103399110,LOC103397697 other downstream 523658 40379395 ~ 40398123 (+)
G68285 NA other downstream 1011510 40867247 ~ 40897108 (+)

Expression


Co-expression Network