LOC120560408


Basic Information

Item Value
gene id LOC120560408
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 39596153 ~ 39602921 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639480.1
GTCCCAGTCGGGGATGACAGAGCAATCACTCTTCCCCAGCTCGGCCTTCTTTTctgttttcctcttttttctttttcttttttagctcTGCGTCTTTACGGATGATTATCCCGGTCAGTTTCAGGCAGATTTATTAGTGACACCGAGTCTGCTGGTCAGCTTCAGGCAACTGGCCAACACTGGAATTGCCTttccttgttgtttttttgctgcgTCGTGCCCTAAAGAGCCACAAGAGAGACTTTCTTCACTGGTTGTTAGAAGACGAGCGAGcgagcaagcaagcaagcatccCAAAGATCCAGCCGACCTGACAGAATGAGGGAGACGATTTGTAAGAGCTGGACTCAAAATGACGAAGGCCACCGATCACCTTTTGGTCCTGTAGTTGGAGCCAGGAATGGATAGAAGACCAAGATCTAAGGATGTGAGTGGGAgtggagttgggttgggaacgaGGTCATGTAATGCTCTGGAGGTAATCAACAGGATCTTGTACTGTATGCTGAATCCCAACGGAAGACTAAGGAGTGATGCAAGAAGTCTGCTGGTCAGCTACAGGCAACGGGCCAACACTACAACtacctctctcttcttcttcttcttcggttTTATTTGTGTTGTGCCGTAAAGAGCCACAACAGAGCTTCTCTTCCCTGGTAGTCTGGAGATGAGAGGAGATCCCATGAAGGGCTCCTTCACTGAGCCAGtctGTAGACCGCTCACTGGAAATCCCGTCCGAATCAACATCCTGTCCCCGGCCTCTAGGAAGTGACCTCAGCTTCAGATAAAGCCTCCGCATCAAAAACATCAGGCCAGCCTTAATAATGAGCTCTGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639480.1 True 839 lncRNA 0.49 3 39596153 39602921

Neighbor

gene id symbol gene type direction distance location
LOC120561457 NA coding upstream 758578 38832087 ~ 38837575 (+)
tgoln2 NA coding upstream 768368 38816729 ~ 38827785 (+)
tcf7l1b tcf7l1,LOC107082304 coding upstream 794437 38712285 ~ 38801716 (+)
si:dkey-31c13.1 NA coding upstream 1009857 38579413 ~ 38586296 (+)
LOC120560325 phyhip,LOC102233080,LOC104946538,LOC100707279 coding upstream 1050791 38527740 ~ 38545362 (+)
LOC120560406 NA coding downstream 240225 39843146 ~ 39855737 (+)
adra1aa adra1a,LOC100708890,LOC102294828,LOC101475209 coding downstream 590747 40193668 ~ 40205536 (+)
igsf9b NA coding downstream 797694 40400615 ~ 40506486 (+)
zfand5a zfand5 coding downstream 931127 40534048 ~ 40556066 (+)
snrnp200 snrnp200 coding downstream 963149 40566070 ~ 40642169 (+)
G68064 NA non-coding upstream 22384 39572822 ~ 39573769 (+)
G68038 NA non-coding upstream 125138 39470444 ~ 39471015 (+)
G68017 NA non-coding upstream 237282 39358662 ~ 39358871 (+)
G67991 NA non-coding upstream 466866 39128582 ~ 39129287 (+)
G67989 NA non-coding upstream 573016 39021683 ~ 39023137 (+)
G68084 NA non-coding downstream 100173 39703094 ~ 39703442 (+)
G68085 NA non-coding downstream 115149 39718070 ~ 39718696 (+)
G68094 NA non-coding downstream 191299 39794220 ~ 39846179 (+)
G68106 NA non-coding downstream 280148 39883069 ~ 39883613 (+)
G68107 NA non-coding downstream 280855 39883776 ~ 39886482 (+)
G68023 NA other upstream 134675 39410222 ~ 39461478 (+)
G67824 NA other upstream 994332 38595811 ~ 38601821 (+)
nkx6.3 nkx6-3,LOC102787307,LOC104940825,LOC102218504 other upstream 1188630 38355603 ~ 38407523 (+)
si:ch211-214j8.12 NA other upstream 1272657 38309603 ~ 38323496 (+)
LOC120560165 LOC104964460,LOC103362321 other upstream 1867448 37717903 ~ 37728705 (+)
LOC120560010 sds other downstream 259542 39862463 ~ 39878496 (+)
vps33a vps33a other downstream 530845 40133766 ~ 40164425 (+)
G68173 NA other downstream 630552 40233473 ~ 40234591 (+)
tmem230b tmem230,LOC101174675,LOC101077900,LOC105939206,LOC103146401,LOC102236919,LOC103356612,LOC107086812,LOC103399110,LOC103397697 other downstream 776474 40379395 ~ 40398123 (+)
G68285 NA other downstream 1264326 40867247 ~ 40897108 (+)

Expression


Co-expression Network