RNA id: TU90875


Basic Information

Item Value
RNA id TU90875
length 210
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G68017
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 39358662 ~ 39358871 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggaatttgttttggtgttgtaggtGCATGTCTTACATTCTCTAAATATAAGAAGGTTAAGAAAATCAAGTAttagaatataaacaatataagtataaatatatatacacagtatgtattaaaaataaaaataaaaagagcagtACAGCAGACTAAGCACAGTGGCATGTGGAGCCAGAGGTGGAGTgtggagagtcagggtgggtTCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90846 lncRNA upstream 229375 39128582 ~ 39129287 (+) True G67991
TU90843 lncRNA upstream 335525 39021683 ~ 39023137 (+) True G67989
TU90839 lncRNA upstream 417990 38940395 ~ 38940672 (+) True G67985
TU90838 lncRNA upstream 430725 38927661 ~ 38927937 (+) True G67984
TU90675 lncRNA upstream 499479 38849316 ~ 38859183 (+) True LOC120560859
TU90884 lncRNA downstream 51351 39410222 ~ 39461478 (+) False G68023
TU90902 lncRNA downstream 111573 39470444 ~ 39471015 (+) True G68038
TU90903 lncRNA downstream 111573 39470444 ~ 39471015 (+) False G68038
TU90934 lncRNA downstream 213951 39572822 ~ 39573769 (+) True G68064
XR_005639480.1 lncRNA downstream 237282 39596153 ~ 39602921 (+) True LOC120560408
XM_039804598.1 mRNA upstream 521087 38832087 ~ 38837575 (+) True LOC120561457
XM_039802713.1 mRNA upstream 530877 38816729 ~ 38827785 (+) True tgoln2
XM_039802712.1 mRNA upstream 531260 38816729 ~ 38827402 (+) False tgoln2
XM_039802709.1 mRNA upstream 556946 38712285 ~ 38801716 (+) True tcf7l1b
XM_039802871.1 mRNA downstream 484275 39843146 ~ 39855737 (+) True LOC120560406
XM_039802099.1 mRNA downstream 503592 39862463 ~ 39877495 (+) True LOC120560010
XM_039804519.1 mRNA downstream 774895 40133766 ~ 40164425 (+) True vps33a
XM_039804552.1 mRNA downstream 834797 40193668 ~ 40205536 (+) True adra1aa
XM_039802032.1 mRNA downstream 1020524 40379395 ~ 40398123 (+) True tmem230b
TU90637 other upstream 760189 38595811 ~ 38598473 (+) False G67824
unassigned_transcript_271 other upstream 926998 38431592 ~ 38431664 (+) True trnaf-gaa_6
TU90566 other upstream 951139 38361472 ~ 38407523 (+) False nkx6.3
TU90405 other upstream 1630004 37723261 ~ 37728658 (+) True LOC120560165
TU89972 other upstream 2877369 36478252 ~ 36481293 (+) False LOC120560081
TU90882 other downstream 51367 39410238 ~ 39413981 (+) True G68023
TU90883 other downstream 51367 39410238 ~ 39413981 (+) False G68023
TU91051 other downstream 774921 40133792 ~ 40142482 (+) False vps33a
TU91053 other downstream 785888 40144759 ~ 40150677 (+) False vps33a
TU91064 other downstream 874602 40233473 ~ 40234591 (+) True G68173

Expression Profile