RNA id: TU90843


Basic Information

Item Value
RNA id TU90843
length 355
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G67989
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 39021683 ~ 39023137 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acagcgctatgtttaactcctaataagactgtagtgacatgcctataggtagcagtatacagcgctatgtttaactcctaataagactgtagagacatgtctataggtagcagtatacagcgctatgtttaactcctaataagactgtagagacatgcctataggtagcagtatacagcgctatgtttaactcctaataagactgtagagacatgcctataggtagcagtatacagtgctatgtttaactcctaataagactgtagagacatgcctataggtagcagtatacagcactatgtgtacgacttcttcatttggttacaacaaagacaaaagtgcttaaaattgtaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90839 lncRNA upstream 81011 38940395 ~ 38940672 (+) True G67985
TU90838 lncRNA upstream 93746 38927661 ~ 38927937 (+) True G67984
TU90675 lncRNA upstream 162500 38849316 ~ 38859183 (+) True LOC120560859
XR_005639526.1 lncRNA upstream 162538 38853085 ~ 38859145 (+) False LOC120560859
TU90671 lncRNA upstream 223337 38797711 ~ 38798346 (+) True G67850
TU90846 lncRNA downstream 105445 39128582 ~ 39129287 (+) True G67991
TU90875 lncRNA downstream 335525 39358662 ~ 39358871 (+) True G68017
TU90884 lncRNA downstream 387085 39410222 ~ 39461478 (+) False G68023
TU90902 lncRNA downstream 447307 39470444 ~ 39471015 (+) True G68038
TU90903 lncRNA downstream 447307 39470444 ~ 39471015 (+) False G68038
XM_039804598.1 mRNA upstream 184108 38832087 ~ 38837575 (+) True LOC120561457
XM_039802713.1 mRNA upstream 193898 38816729 ~ 38827785 (+) True tgoln2
XM_039802712.1 mRNA upstream 194281 38816729 ~ 38827402 (+) False tgoln2
XM_039802709.1 mRNA upstream 219967 38712285 ~ 38801716 (+) True tcf7l1b
XM_039802871.1 mRNA downstream 820009 39843146 ~ 39855737 (+) True LOC120560406
XM_039802099.1 mRNA downstream 839326 39862463 ~ 39877495 (+) True LOC120560010
XM_039804519.1 mRNA downstream 1110629 40133766 ~ 40164425 (+) True vps33a
XM_039804552.1 mRNA downstream 1170531 40193668 ~ 40205536 (+) True adra1aa
XM_039802032.1 mRNA downstream 1356258 40379395 ~ 40398123 (+) True tmem230b
TU90637 other upstream 423210 38595811 ~ 38598473 (+) False G67824
unassigned_transcript_271 other upstream 590019 38431592 ~ 38431664 (+) True trnaf-gaa_6
TU90566 other upstream 614160 38361472 ~ 38407523 (+) False nkx6.3
TU90405 other upstream 1293025 37723261 ~ 37728658 (+) True LOC120560165
TU89972 other upstream 2540390 36478252 ~ 36481293 (+) False LOC120560081
TU90882 other downstream 387101 39410238 ~ 39413981 (+) True G68023
TU90883 other downstream 387101 39410238 ~ 39413981 (+) False G68023
TU91051 other downstream 1110655 40133792 ~ 40142482 (+) False vps33a
TU91053 other downstream 1121622 40144759 ~ 40150677 (+) False vps33a
TU91064 other downstream 1210336 40233473 ~ 40234591 (+) True G68173

Expression Profile