LOC120560859


Basic Information

Item Value
gene id LOC120560859
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 38849316 ~ 38859183 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU90675
CGTGCCTGCAGGCAGTCCTCGGTTGCCCGGGAAACACAGATGGTGGATGAAGGGCGCGCATACAAAGGACCGTAAACCTGTAGCGGCAGCTGGAGACCGAGCCCACCGATTAATTCAGCTGTGTGCTGCTCCAGCTTAGTCAAAGAcgtctctgttctctttcaatACCTACTTCATTTTCTCTTTGTCCTGCGCAGCTTTCGGATCCACTTGAGCCTGTTTTCCGTGCACCGGTCTCCCGTCAGTGCGCAGCTGTTGTCGGCACTCCCACATCTGCTTGTCTCGGTCTCGGCAGCCATGTAGCCGTGCACGTCCAGGGGGGCGACGGCCAGCACTTTTACTGCGGGCTAATCACTGCTCACACACGGCGTGGAACCGGTTTGCAGCGTCGGCAGCTTGTCCCGAGAATGGAAGAAGGtaaaaggaggaaaaagaggaaggagaagTGATCTTTTCGCGCCGTTGGATGCTCGGCATGGTGCATATGTGGAACCTGGAAATCTCTGGTAACCTCGGGTCGGTGTTTCCGGATTCatctacagcgctgtggacaTGTCGCTGGTCGGATCCGGCATCCAGATGggaagcagcagcaggacaGGTTATGTGTACAGGCTGTTTATTAGCTTTATTCAAATAATGGAGCATAGCTTTTAACGGCACACAATATCAGATGGAGAATTGAATAGCTTTACTGAGTCAGTCAGTTCACGTAAACTGACACAACTAGACCCCCATCTGAAAGGATTTCGTCCCCCATCTGATAGAATTTGtgcttttaaatgtattattacagAAAATGTATAAAACCCATGACCAACAGAATAGAGCTGTAACGATAAGTGGACAAACTGATTAGTCGatcaatagaaaaataaacaacCAACTATTtagataatcgattaatcgttaaagtaattttacattgaaaattTGACAGATATGGACATTTCCTGCTGTTTTCTGTTAGATATCATATTAAAccaaatatctttgggttttggactgacaaaacaagacatttaaagagaCATCAGCCTGGACTTtgagggcgttttcacacctgaaagtccgaaccaaggtccggaccaaggttcatgtttttgttacattgtatacatttgatccggcaagttttggtttcacacggcagttatgcaagcgcactaaagatctctacgtgacaaacctacgtcctgccgtcatccaGATACTTAGAATGGATTGGTTTGTTGAcaggcttccccgtcctctcgtatcctctctctgggtccgAGTTTTTTAACtgcctgctgctctcccctactgccacGGCTCTTTTTGTTGTCGCGatgttgagaagcaagacacgggaactttctctctggagcatttattcagagacaaacggaaacctactacttaacaaataaaccgctgatgtattctctgctctgatagccgacagctgtctgctctgagcgcattcaCCGTCACTCACACTCTCATGTAGCCTACAcactaagcaccgagctattccttaaaggagcttccccggtcttatAACCCGATgatagcctgccagagcttcctgtatttggtccgaaagtccgaaccatccaaaaaatgctttcaaccTATAAAtgaaccggaccatggttcagtttggtccggaccgagaccacacctgtaattttgtttcggatcaaactgaaaagtccgaaagtccggaccaaatgaggtaggtgtgaaaacgccctaagaaACTGGGATAGACATTTTCCACTATTTCCTTACATTTCATAGACGAGTAATCGAAAAAATAAGCCGCCAGCTTAAtcgaaaatgaaaataatcgttagttgcaacGCTACAACACAGTCGACATTGTGTTACTCATGGATGGATTCACAGTCAGAATAAATAATGCCCCTTTAGCTGTGGACCCCCTGGAACCTCCCTCAAGGACTTTGGGAACCACCGAGTTAGATATCTGATACTGGGACTTATATCTGATAGCAGTGGCTGTATATCATTGTTTGAAATGTGTCTTCAAACCAAGCAGCGCTAAGGAGAAACAATAAAACCCAAGAAGCAGTTATCCCTGGGGGAGCTTGGGAGGGACGGTTGGGTTGTGTCCccacttttttttcctgctgctttgtgttgtgtgttcctCTCCAGTTCCACTGATGAGAAAGCAGACGGGCTACAGGGGGGAGGGCACGCGCCGGCTGGACCTCCGGAGCGCCATCACGACGCCATCGCACCCCGCTGCGCCGCCTCACACACTGTCCTTGCTCCTGCAGTGATGGATGCCCGGCGCCATCACTGCTGTCCTGCGCCTTCAGAAGGAAGACGATCACCGTCCAGGTGTTTCCCCGCCGAGAGACGACTTCTACTGCTGGTGTGCTTCCGCGAAAATGGCTTAGAAGAGTTCAGAACGCCACCACTGCTTTGTAGTCAGTGTCCGCAAGATCCAATTTAGCAGGAAGGTatttcaggtgttttttttcgAGTCCAAAATAATCTGCTGCAACGTTCCTTCCCGTTTCTCTCGACTGTGCGTGTTTTCCCGGCCGGCTGTGAGCAACAGGCTGCTGATATAGCTGCCTCCACCCCCACTCTCACGTTTTGTCTATTGGCTGATGAGAAACACGGACACCGCAGCTATCAAACACCTCCTCATGCTTGTTTTCTCCAGCTGCCGTGTGCAGTGACCTGTCGAACACTTTGGCCACTTCTCCCTGTATGAGACAGTCTTTTACCTGGGTTTGTACAGGACTTGGGTGCACATATTTTGCGGAGggtttaggggtcctccctcaagaaaatgttacaaaaacaaTATGCAGTGTCACATCATTTAAGACCATTATTGTAACCATATCTgggtctaaaacgttggaaaagctagagcagataataaaaaaacaacactcaaAAAGCCTGCTAAAtagaaaagtaatttagttagtgcccacattgattttacattcattcggcTTAGGTGGTGCCCAAAGCGTGTAAGCGTCCAAGCCTTATTCTGGTCTGGAAAACCCTGGTATCGGACATGTAAATTCACTCAAAAGTAGTGTTTTTTAACGTGTGTTAGCATCTCACTGAAGCCAGCATGCATCTTGGCCAGATCCAGAACTGGAACGCTCTGATATTCAAAGCCTGTGAGATCTGCTTACGTGTGTGAGAACGAGTAGTTTTTACACGTGGTGACAATGTGTGATTCACACAGTATGTTCTTGGTCTTGAAAACTTCTTCATTTGGGTGTGTGATACCAACTACCTTTAATACGCACTCTATGTATTTTTACTGCAGcgtgtgggcgtgtgtgtgcgtgtgtatgtgtgtgtcggcGTAAGTGCacgtttgtgtgcatgtgctctatttgtgtgtgtgtgtgtgtttgttcctgtgtgtgtgtatgtgtgtgtgtgtgtctgattaaaCACATTTGTAATAGGCCTGAAGCTTCTAGCTGCTTTTCAATGGTTTTGTCATCGCTGCACACTTTTTCAAATGCCTGAATCTCTTTCTTTTAGTGCACTGGATGTACCggggataaaaaaagaaaaaaaaaaaaaaaaaactttttacagATGATTCTTAGCATTTGTTACAACCTCATTGAAGTCCCAGTTAGGTGGGGGCTCTTGCGATTTAGATAAGCACAAGAATGTCGCTGGAAATGAATGGTGTGTGGCTTTCTAAATGATCCCTGCTGGCGCTAATTAAACTGCCCCGATGCCAACAGCCCCATCATCTGATACTTCAGCAAATTACAGCAAATGCTAATAATTATGTGCaaatagcttctttttttttttttaacccaggTCTGGATTCTACTAACAGTATCTGACTAATATCTAACAATACTAATGTCTGCTAACAGTGGGATGATTACTAACCTGTACTCTGAATGCTCATTGGCTGGCtttttttctatctatctaaccCCCCGACTAACCCTCTGCTTTATTTGATGCCCCCgcagtctgacacacacacactcctctctcATGATCCTGCAATCCTTCTGCTAGAAATCACAAACGCAGATGGATTAACAGGGTTCAACGTTAAGGTTTGATGTCACGTGTCCGGTCGGGCAAGTGAAAAGAAATTTGGCGTTTTACTTGCCCCAGGCCGTCGGGCAACCCTTAATGTTgaaccctaaaaaaaaaatcaataaaaagtgtcAAAGTGAGCACGTGGAGAAGGGTTTCAGGACTTGGGAAGGGAAATGTTATTAACCACTAGATGGAAGGGAGGAGCAGGAACAGCTGGGTTGACCACACACTTTAGAAGAATCCTCCCGAAGGCGATTCTGATCTGATCCCAAACGGTACCGCCGCACTGTGTCCCACTTCACAGGCCCAAATTCCCATCTTGAGAGAGCGTCATGTCTGCGTGTCTCTGCCTGCGCGCTGTGTGGTCAACCCTCGCAGGTGAGTGCCTGGCTTGTTGTTGTCACCACACGCCAAGCATAACCGCAGCTCCACTAACTCCTCATGGTGTGGATACTAACAGCGGGGAGGCTGTGAAGGGCGCTCTTACTAACATCTGTGTTCTTTCTGACTGAAACATCCGGACGTCTGTAATGCAATGATCCAGTCTCTTTGTTCATCTTTGATTAAATCAAAGCATGCCTCGTGGTACAAGTGGTGACATGGAAGCTTTTATCCAAAATATCTTGCTGTTCCATGACTGGATGCTTTTTAGCGAAGGGAACTAGGTCCTCATAAACAGGCACGTTTTGTTCTTTCCACAAGCTACTAACATCTAAAGTTAAAGTACTAACCAAAGAGCTTGTATTAGCTCTCTgcaaactaacaaactaacccACTAATAAACTAATAACCTAACAATAACTAACTAAAATCACTAACTGTGTGCTAAGTGTCAGAATTAGGGAAGCACCCTGATTTTGAGGAGTCGCATCACTTATTGAATGTACTAACAGAATTAAGTTTCTAAGAGtcgaaatgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgacagagagcgagacagagagcacaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagcgtgtgtgtgtatgttctcaTACAATAATTTCACATATCAAtgcagattatatatatatatatatatatatatatatatattagagcaGTTTTAGCCAAATGTATCCACAATTACACTTTCATACCTCTAAAACAAAAGACTGTGTGGAAGAATAATgcatgtaaagaaaaataaactcaATGTACACTACTAACTATTTTTGTGCATTCATACATCACTTTATCATT
>XR_005639526.1
tggtccggaccgagaccacacctgtaattttgtttcggatcaaactgaaaagtccgaaagtccggaccaaatgaggtaggtgtgaaaacgccctaagaaACTGGGATAGACATTTTCCACTATTTCCTTACATTTCATAGACGAGTAATCGAAAAAATAAGCCGCCAGCTTAAtcgaaaatgaaaataatcgttagttgcaacGCTACAACACAGTCGACATTGTGTTACTCATGGATGGATTCACAGTCAGAATAAATAATGCCCCTTTAGCTGTGGACCCCCTGGAACCTCCCTCAAGGACTTTGGGAACCACCGAGTTAGATATCTGATACTGGGACTTATATCTGATAGCAGTGGCTGTATATCATTGTTTGAAATGTGTCTTCAAACCAAGCAGCGCTAAGGAGAAACAATAAAACCCAAGAAGCAGTTATCCCTGGGGGAGCTTGGGAGGGACGGTTGGGTTGTGTCCccacttttttttcctgctgctttgtgttgtgtgttcctCTCCAGTTCCACTGATGAGAAAGCAGACGGGCTACAGGGGGGAGGGCACGCGCCGGCTGGACCTCCGGAGCGCCATCACGACGCCATCGCACCCCGCTGCGCCGCCTCACACACTGTCCTTGCTCCTGCAGTGATGGATGCCCGGCGCCATCACTGCTGTCCTGCGCCTTCAGAAGGAAGACGATCACCGTCCAGGTGTTTCCCCGCCGAGAGACGACTTCTACTGCTGGTGTGCTTCCGCGAAAATGGCTTAGAAGAGTTCAGAACGCCACCACTGCTTTGTAGTCAGTGTCCGCAAGATCCAATTTAGCAGGAAGGTatttcaggtgttttttttcgAGTCCAAAATAATCTGCTGCAACGTTCCTTCCCGTTTCTCTCGACTGTGCGTGTTTTCCCGGCCGGCTGTGAGCAACAGGCTGCTGATATAGCTGCCTCCACCCCCACTCTCACGTTTTGTCTATTGGCTGATGAGAAACACGGACACCGCAGCTATCAAACACCTCCTCATGCTTGTTTTCTCCAGCTGCCGTGTGCAGTGACCTGTCGAACACTTTGGCCACTTCTCCCTGTATGAGACAGTCTTTTACCTGGGTTTGTACAGGACTTGGGTGCACATATTTTGCGGAGggtttaggggtcctccctcaagaaaatgttacaaaaacaaTATGCAGTGTCACATCATTTAAGACCATTATTGTAACCATATCTgggtctaaaacgttggaaaagctagagcagataataaaaaaacaacactcaaAAAGCCTGCTAAAtagaaaagtaatttagttagtgcccacattgattttacattcattcggcTTAGGTGGTGCCCAAAGCGTGTAAGCGTCCAAGCCTTATTCTGGTCTGGAAAACCCTGGTATCGGACATGTAAATTCACTCAAAAGTAGTGTTTTTTAACGTGTGTTAGCATCTCACTGAAGCCAGCATGCATCTTGGCCAGATCCAGAACTGGAACGCTCTGATATTCAAAGCCTGTGAGATCTGCTTACGTGTGTGAGAACGAGTAGTTTTTACACGTGGTGACAATGTGTGATTCACACAGTATGTTCTTGGTCTTGAAAACTTCTTCATTTGGGTGTGTGATACCAACTACCTTTAATACGCACTCTATGTATTTTTACTGCAGcgtgtgggcgtgtgtgtgcgtgtgtatgtgtgtgtcggcGTAAGTGCacgtttgtgtgcatgtgctctatttgtgtgtgtgtgtgtgtttgttcctgtgtgtgtgtatgtgtgtgtgtgtgtctgattaaaCACATTTGTAATAGGCCTGAAGCTTCTAGCTGCTTTTCAATGGTTTTGTCATCGCTGCACACTTTTTCAAATGCCTGAATCTCTTTCTTTTAGTGCACTGGATGTACCggggataaaaaaagaaaaaaaaaaaaaaaaaactttttacagATGATTCTTAGCATTTGTTACAACCTCATTGAAGTCCCAGTTAGGTGGGGGCTCTTGCGATTTAGATAAGCACAAGAATGTCGCTGGAAATGAATGGTGTGTGGCTTTCTAAATGATCCCTGCTGGCGCTAATTAAACTGCCCCGATGCCAACAGCCCCATCATCTGATACTTCAGCAAATTACAGCAAATGCTAATAATTATGTGCaaatagcttctttttttttttttaacccaggTCTGGATTCTACTAACAGTATCTGACTAATATCTAACAATACTAATGTCTGCTAACAGTGGGATGATTACTAACCTGTACTCTGAATGCTCATTGGCTGGCtttttttctatctatctaaccCCCCGACTAACCCTCTGCTTTATTTGATGCCCCCgcagtctgacacacacacactcctctctcATGATCCTGCAATCCTTCTGCTAGAAATCACAAACGCAGATGGATTAACAGGGTTCAACGTTAAGGTTTGATGTCACGTGTCCGGTCGGGCAAGTGAAAAGAAATTTGGCGTTTTACTTGCCCCAGGCCGTCGGGCAACCCTTAATGTTgaaccctaaaaaaaaaatcaataaaaagtgtcAAAGTGAGCACGTGGAGAAGGGTTTCAGGACTTGGGAAGGGAAATGTTATTAACCACTAGATGGAAGGGAGGAGCAGGAACAGCTGGGTTGACCACACACTTTAGAAGAATCCTCCCGAAGGCGATTCTGATCTGATCCCAAACGGTACCGCCGCACTGTGTCCCACTTCACAGGCCCAAATTCCCATCTTGAGAGAGCGTCATGTCTGCGTGTCTCTGCCTGCGCGCTGTGTGGTCAACCCTCGCAGGTGAGTGCCTGGCTTGTTGTTGTCACCACACGCCAAGCATAACCGCAGCTCCACTAACTCCTCATGGTGTGGATACTAACAGCGGGGAGGCTGTGAAGGGCGCTCTTACTAACATCTGTGTTCTTTCTGACTGAAACATCCGGACGTCTGTAATGCAATGATCCAGTCTCTTTGTTCATCTTTGATTAAATCAAAGCATGCCTCGTGGTACAAGTGGTGACATGGAAGCTTTTATCCAAAATATCTTGCTGTTCCATGACTGGATGCTTTTTAGCGAAGGGAACTAGGTCCTCATAAACAGGCACGTTTTGTTCTTTCCACAAGCTACTAACATCTAAAGTTAAAGTACTAACCAAAGAGCTTGTATTAGCTCTCTgcaaactaacaaactaacccACTAATAAACTAATAACCTAACAATAACTAACTAAAATCACTAACTGTGTGCTAAGTGTCAGAATTAGGGAAGCACCCTGATTTTGAGGAGTCGCATCACTTATTGAATGTACTAACAGAATTAAGTTTCTAAGAGtcgaaatgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgacagagagcgagacagagagcacaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagcgtgtgtgtgtatgttctcaTACAATAATTTCACATATCAAtgcagattatatatatatatatatatatatatatatatattagagcaGTTTTAGCCAAATGTATCCACAATTACACTTTCATACCTCTAAAACAAAAGACTGTGTGGAAGAATAATgcatgtaaagaaaaataaactcaATGTACACTA

Function

GO: NA

KEGG:

id description
ko04724 Glutamatergic synapse
ko04720 Long-term potentiation
ko05014 Amyotrophic lateral sclerosis
ko05031 Amphetamine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU90675 True 5336 lncRNA 0.45 3 38849316 38859183
XR_005639526.1 False 3653 lncRNA 0.44 2 38853085 38859145

Neighbor

gene id symbol gene type direction distance location
LOC120561457 NA coding upstream 11741 38832087 ~ 38837575 (+)
tgoln2 NA coding upstream 21531 38816729 ~ 38827785 (+)
tcf7l1b tcf7l1,LOC107082304 coding upstream 47600 38712285 ~ 38801716 (+)
si:dkey-31c13.1 NA coding upstream 263020 38579413 ~ 38586296 (+)
LOC120560325 phyhip,LOC102233080,LOC104946538,LOC100707279 coding upstream 303954 38527740 ~ 38545362 (+)
LOC120560406 NA coding downstream 983963 39843146 ~ 39855737 (+)
adra1aa adra1a,LOC100708890,LOC102294828,LOC101475209 coding downstream 1334485 40193668 ~ 40205536 (+)
igsf9b NA coding downstream 1541432 40400615 ~ 40506486 (+)
zfand5a zfand5 coding downstream 1674865 40534048 ~ 40556066 (+)
snrnp200 snrnp200 coding downstream 1706887 40566070 ~ 40642169 (+)
G67850 NA non-coding upstream 50970 38797711 ~ 38798346 (+)
G67844 NA non-coding upstream 54076 38690955 ~ 38795240 (+)
G67838 LOC104946535,LOC103470542,LOC101482088,LOC107393720,LOC101172587,LOC106915872 non-coding upstream 178659 38658604 ~ 38670657 (+)
G67836 dbnl non-coding upstream 191797 38641275 ~ 38657519 (+)
G67830 NA non-coding upstream 193119 38633771 ~ 38656197 (+)
G67984 NA non-coding downstream 68478 38927661 ~ 38927937 (+)
G67985 NA non-coding downstream 81212 38940395 ~ 38940672 (+)
G67989 NA non-coding downstream 162500 39021683 ~ 39023137 (+)
G67991 NA non-coding downstream 269399 39128582 ~ 39129287 (+)
G68017 NA non-coding downstream 499479 39358662 ~ 39358871 (+)
G67824 NA other upstream 247495 38595811 ~ 38601821 (+)
nkx6.3 nkx6-3,LOC102787307,LOC104940825,LOC102218504 other upstream 441793 38355603 ~ 38407523 (+)
si:ch211-214j8.12 NA other upstream 525820 38309603 ~ 38323496 (+)
LOC120560165 LOC104964460,LOC103362321 other upstream 1120611 37717903 ~ 37728705 (+)
LOC120560081 NA other upstream 2368005 36477798 ~ 36481311 (+)
G68023 NA other downstream 551039 39410222 ~ 39461478 (+)
LOC120560010 sds other downstream 1003280 39862463 ~ 39878496 (+)
vps33a vps33a other downstream 1274583 40133766 ~ 40164425 (+)
G68173 NA other downstream 1374290 40233473 ~ 40234591 (+)
tmem230b tmem230,LOC101174675,LOC101077900,LOC105939206,LOC103146401,LOC102236919,LOC103356612,LOC107086812,LOC103399110,LOC103397697 other downstream 1520212 40379395 ~ 40398123 (+)

Expression


Co-expression Network