RNA id: XR_005639526.1


Basic Information

Item Value
RNA id XR_005639526.1
length 3653
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id LOC120560859
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 38849316 ~ 38859183 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tggtccggaccgagaccacacctgtaattttgtttcggatcaaactgaaaagtccgaaagtccggaccaaatgaggtaggtgtgaaaacgccctaagaaACTGGGATAGACATTTTCCACTATTTCCTTACATTTCATAGACGAGTAATCGAAAAAATAAGCCGCCAGCTTAAtcgaaaatgaaaataatcgttagttgcaacGCTACAACACAGTCGACATTGTGTTACTCATGGATGGATTCACAGTCAGAATAAATAATGCCCCTTTAGCTGTGGACCCCCTGGAACCTCCCTCAAGGACTTTGGGAACCACCGAGTTAGATATCTGATACTGGGACTTATATCTGATAGCAGTGGCTGTATATCATTGTTTGAAATGTGTCTTCAAACCAAGCAGCGCTAAGGAGAAACAATAAAACCCAAGAAGCAGTTATCCCTGGGGGAGCTTGGGAGGGACGGTTGGGTTGTGTCCccacttttttttcctgctgctttgtgttgtgtgttcctCTCCAGTTCCACTGATGAGAAAGCAGACGGGCTACAGGGGGGAGGGCACGCGCCGGCTGGACCTCCGGAGCGCCATCACGACGCCATCGCACCCCGCTGCGCCGCCTCACACACTGTCCTTGCTCCTGCAGTGATGGATGCCCGGCGCCATCACTGCTGTCCTGCGCCTTCAGAAGGAAGACGATCACCGTCCAGGTGTTTCCCCGCCGAGAGACGACTTCTACTGCTGGTGTGCTTCCGCGAAAATGGCTTAGAAGAGTTCAGAACGCCACCACTGCTTTGTAGTCAGTGTCCGCAAGATCCAATTTAGCAGGAAGGTatttcaggtgttttttttcgAGTCCAAAATAATCTGCTGCAACGTTCCTTCCCGTTTCTCTCGACTGTGCGTGTTTTCCCGGCCGGCTGTGAGCAACAGGCTGCTGATATAGCTGCCTCCACCCCCACTCTCACGTTTTGTCTATTGGCTGATGAGAAACACGGACACCGCAGCTATCAAACACCTCCTCATGCTTGTTTTCTCCAGCTGCCGTGTGCAGTGACCTGTCGAACACTTTGGCCACTTCTCCCTGTATGAGACAGTCTTTTACCTGGGTTTGTACAGGACTTGGGTGCACATATTTTGCGGAGggtttaggggtcctccctcaagaaaatgttacaaaaacaaTATGCAGTGTCACATCATTTAAGACCATTATTGTAACCATATCTgggtctaaaacgttggaaaagctagagcagataataaaaaaacaacactcaaAAAGCCTGCTAAAtagaaaagtaatttagttagtgcccacattgattttacattcattcggcTTAGGTGGTGCCCAAAGCGTGTAAGCGTCCAAGCCTTATTCTGGTCTGGAAAACCCTGGTATCGGACATGTAAATTCACTCAAAAGTAGTGTTTTTTAACGTGTGTTAGCATCTCACTGAAGCCAGCATGCATCTTGGCCAGATCCAGAACTGGAACGCTCTGATATTCAAAGCCTGTGAGATCTGCTTACGTGTGTGAGAACGAGTAGTTTTTACACGTGGTGACAATGTGTGATTCACACAGTATGTTCTTGGTCTTGAAAACTTCTTCATTTGGGTGTGTGATACCAACTACCTTTAATACGCACTCTATGTATTTTTACTGCAGcgtgtgggcgtgtgtgtgcgtgtgtatgtgtgtgtcggcGTAAGTGCacgtttgtgtgcatgtgctctatttgtgtgtgtgtgtgtgtttgttcctgtgtgtgtgtatgtgtgtgtgtgtgtctgattaaaCACATTTGTAATAGGCCTGAAGCTTCTAGCTGCTTTTCAATGGTTTTGTCATCGCTGCACACTTTTTCAAATGCCTGAATCTCTTTCTTTTAGTGCACTGGATGTACCggggataaaaaaagaaaaaaaaaaaaaaaaaactttttacagATGATTCTTAGCATTTGTTACAACCTCATTGAAGTCCCAGTTAGGTGGGGGCTCTTGCGATTTAGATAAGCACAAGAATGTCGCTGGAAATGAATGGTGTGTGGCTTTCTAAATGATCCCTGCTGGCGCTAATTAAACTGCCCCGATGCCAACAGCCCCATCATCTGATACTTCAGCAAATTACAGCAAATGCTAATAATTATGTGCaaatagcttctttttttttttttaacccaggTCTGGATTCTACTAACAGTATCTGACTAATATCTAACAATACTAATGTCTGCTAACAGTGGGATGATTACTAACCTGTACTCTGAATGCTCATTGGCTGGCtttttttctatctatctaaccCCCCGACTAACCCTCTGCTTTATTTGATGCCCCCgcagtctgacacacacacactcctctctcATGATCCTGCAATCCTTCTGCTAGAAATCACAAACGCAGATGGATTAACAGGGTTCAACGTTAAGGTTTGATGTCACGTGTCCGGTCGGGCAAGTGAAAAGAAATTTGGCGTTTTACTTGCCCCAGGCCGTCGGGCAACCCTTAATGTTgaaccctaaaaaaaaaatcaataaaaagtgtcAAAGTGAGCACGTGGAGAAGGGTTTCAGGACTTGGGAAGGGAAATGTTATTAACCACTAGATGGAAGGGAGGAGCAGGAACAGCTGGGTTGACCACACACTTTAGAAGAATCCTCCCGAAGGCGATTCTGATCTGATCCCAAACGGTACCGCCGCACTGTGTCCCACTTCACAGGCCCAAATTCCCATCTTGAGAGAGCGTCATGTCTGCGTGTCTCTGCCTGCGCGCTGTGTGGTCAACCCTCGCAGGTGAGTGCCTGGCTTGTTGTTGTCACCACACGCCAAGCATAACCGCAGCTCCACTAACTCCTCATGGTGTGGATACTAACAGCGGGGAGGCTGTGAAGGGCGCTCTTACTAACATCTGTGTTCTTTCTGACTGAAACATCCGGACGTCTGTAATGCAATGATCCAGTCTCTTTGTTCATCTTTGATTAAATCAAAGCATGCCTCGTGGTACAAGTGGTGACATGGAAGCTTTTATCCAAAATATCTTGCTGTTCCATGACTGGATGCTTTTTAGCGAAGGGAACTAGGTCCTCATAAACAGGCACGTTTTGTTCTTTCCACAAGCTACTAACATCTAAAGTTAAAGTACTAACCAAAGAGCTTGTATTAGCTCTCTgcaaactaacaaactaacccACTAATAAACTAATAACCTAACAATAACTAACTAAAATCACTAACTGTGTGCTAAGTGTCAGAATTAGGGAAGCACCCTGATTTTGAGGAGTCGCATCACTTATTGAATGTACTAACAGAATTAAGTTTCTAAGAGtcgaaatgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgacagagagcgagacagagagcacaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagcgtgtgtgtgtatgttctcaTACAATAATTTCACATATCAAtgcagattatatatatatatatatatatatatatatatattagagcaGTTTTAGCCAAATGTATCCACAATTACACTTTCATACCTCTAAAACAAAAGACTGTGTGGAAGAATAATgcatgtaaagaaaaataaactcaATGTACACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90671 lncRNA upstream 54739 38797711 ~ 38798346 (+) True G67850
TU90662 lncRNA upstream 57845 38690955 ~ 38795240 (+) True G67844
TU90655 lncRNA upstream 182428 38658604 ~ 38670657 (+) True G67838
TU90656 lncRNA upstream 185673 38658604 ~ 38667412 (+) False G67838
TU90654 lncRNA upstream 189716 38658604 ~ 38663369 (+) False G67838
TU90838 lncRNA downstream 68516 38927661 ~ 38927937 (+) True G67984
TU90839 lncRNA downstream 81250 38940395 ~ 38940672 (+) True G67985
TU90843 lncRNA downstream 162538 39021683 ~ 39023137 (+) True G67989
TU90846 lncRNA downstream 269437 39128582 ~ 39129287 (+) True G67991
TU90875 lncRNA downstream 499517 39358662 ~ 39358871 (+) True G68017
XM_039804598.1 mRNA upstream 15510 38832087 ~ 38837575 (+) True LOC120561457
XM_039802713.1 mRNA upstream 25300 38816729 ~ 38827785 (+) True tgoln2
XM_039802712.1 mRNA upstream 25683 38816729 ~ 38827402 (+) False tgoln2
XM_039802709.1 mRNA upstream 51369 38712285 ~ 38801716 (+) True tcf7l1b
XM_039802871.1 mRNA downstream 984001 39843146 ~ 39855737 (+) True LOC120560406
XM_039802099.1 mRNA downstream 1003318 39862463 ~ 39877495 (+) True LOC120560010
XM_039804519.1 mRNA downstream 1274621 40133766 ~ 40164425 (+) True vps33a
XM_039804552.1 mRNA downstream 1334523 40193668 ~ 40205536 (+) True adra1aa
XM_039802032.1 mRNA downstream 1520250 40379395 ~ 40398123 (+) True tmem230b
TU90637 other upstream 254612 38595811 ~ 38598473 (+) False G67824
unassigned_transcript_271 other upstream 421421 38431592 ~ 38431664 (+) True trnaf-gaa_6
TU90566 other upstream 445562 38361472 ~ 38407523 (+) False nkx6.3
TU90405 other upstream 1124427 37723261 ~ 37728658 (+) True LOC120560165
TU89972 other upstream 2371792 36478252 ~ 36481293 (+) False LOC120560081
TU90882 other downstream 551093 39410238 ~ 39413981 (+) True G68023
TU90883 other downstream 551093 39410238 ~ 39413981 (+) False G68023
TU91051 other downstream 1274647 40133792 ~ 40142482 (+) False vps33a
TU91053 other downstream 1285614 40144759 ~ 40150677 (+) False vps33a
TU91064 other downstream 1374328 40233473 ~ 40234591 (+) True G68173

Expression Profile