RNA id: TU90654


Basic Information

Item Value
RNA id TU90654
length 1823
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G67838
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 38658604 ~ 38670657 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACAGTAAACCAAGATGAGCTTTATTCATATGTTATGAGAAGGTCAATAGTtatcttgtgtaggctatgtgaGGACAAGTGGACAAGTTCATGGTGGCATTTCAAGCACATATATTCCAAATTTTAAGATGCACGAAGGCTGGTCCTGCATTCAGAGAAAGCCAGGCAGAAgatttaacaaataaaactgaaaaatattgGTGCCGTTCAAGCAGGTTTCCATGTCTACGGATGAAATGAATCACCCATTTAGGGGGATACAGCCCTGATAGCAAATTTACAGTTCATGACAATGCTCTTtctctatatatatacaaaatgaGGGTTAAGGCTAAAATTTTTAGTCAGAGGTGTTAGGCAGATGAATTGTAACGAAATCCCTGATATCTGGCAAATGGCTGTGAGAAGGTTCTCCAGAGTGCAAAGCATGCCAAGCTGCCTATCTATATAAACTCTATTGAACACACTGGACAAAGGAAGTCAACGCCGCACCACTCACATGACCAATTCAGGGtgcattcaaaaaaaaaaaaaatcgtacatttggaagaaaaccgctttcaaataaataaatagctagatgaacaaacaaacgcacacaaTGTACTACAGCACACAAGCCTTTTTTCAGTCGGGTGTGGCAGCAAACAGACTTTCACTGCATTTAGAGGATATATTCTCAAAACATATTAGTGTATACTTTTTCATGACCTCCTGTTTTGATAATTTTCTCTACAGCAGCTAAGAGGAAATCTATATTTAGTGCCTAAAGTGTGGTGTTAATTCTACAATCAAAGCCTCTAATGCTCATGCTTTACTATGGACCTTTCTGGATGAATCCACTCTATTATATGCCTCAAAAGCTAATTTATTCCCCCTTTCATAATACCAAATGATTCCCTTTGTATTGGCAGCATCAGCACATTATGAGCCATgactgaaaaaataataatatatatatattcaaagcATTTTTTTCATTAACTACTTTATCCAACAGTCACAATGGATTATATTAAAATCAACATTACAGATCACAATCTTTTTCAATGTTCTATCTGGTGACATGATTGAAAAGAAATTGCCCATCACCGAAGCTTTCAAAGATACAATACAAAAAGGTCACAAAACGGATCACCGCGACAAACGCTTTCACTGTCAGTGTGGATTATTAATCCccaaacaaaacacacttttGCAGACCcgaataataagaagaagatgatgaagaaatGCAGACAAACGTCACATCGATTGGACGTTTAAAAGCAGATTTAAATGGTCACGGCGCCTGTATTTATTCACCTCAAGTAACAGAGCGTGACTTTAAATAAAATAGgttctggaaaaaaaacaccatgtcTGTTTAAGTTCCCCTTATGACCACGAGTGACGAGTCagtttcatttttagaataacaGTAgcacgtacagtacaggccaaaagtttggacacaccttctcattcaatgtgtttctttattttcatgactatttacattgtagattctcactgaaggcatcaaaactatgaatgaacacatatggaattatgtacttaacaaaaaagtgtgaaataactgaaaacatgtcttatattttagattcttcaaagtagccaccctttgcttttttttgataactctgcaaacccttggtgttctctcaatgagcttcatgctttgtcagggttaattagtggaatttgttcccttattaataaaaaaacaaagggtggctactttgaggaatctaaaatataagtacataattccatatgcgtttcctttttattttcatgaccatttacattgtagattctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90651 lncRNA upstream 1085 38641275 ~ 38657519 (+) True G67836
TU90643 lncRNA upstream 2407 38633771 ~ 38656197 (+) True G67830
TU90636 lncRNA upstream 56783 38595811 ~ 38601821 (+) True G67824
TU90574 lncRNA upstream 144588 38422361 ~ 38514016 (+) True G67766
TU90662 lncRNA downstream 27586 38690955 ~ 38795240 (+) True G67844
TU90671 lncRNA downstream 134342 38797711 ~ 38798346 (+) True G67850
TU90675 lncRNA downstream 185947 38849316 ~ 38859183 (+) True LOC120560859
XR_005639526.1 lncRNA downstream 189716 38853085 ~ 38859145 (+) False LOC120560859
TU90838 lncRNA downstream 264292 38927661 ~ 38927937 (+) True G67984
XM_039802695.1 mRNA upstream 72308 38579413 ~ 38586296 (+) True si:dkey-31c13.1
XM_039802696.1 mRNA upstream 72308 38579413 ~ 38586296 (+) False si:dkey-31c13.1
XM_039802691.1 mRNA upstream 113242 38527740 ~ 38545362 (+) True LOC120560325
XM_039804098.1 mRNA upstream 292701 38355603 ~ 38365903 (+) True nkx6.3
XM_039804048.1 mRNA upstream 335108 38309603 ~ 38323496 (+) True si:ch211-214j8.12
XM_039802709.1 mRNA downstream 48916 38712285 ~ 38801716 (+) True tcf7l1b
XM_039802710.1 mRNA downstream 48916 38712285 ~ 38801716 (+) False tcf7l1b
XM_039802713.1 mRNA downstream 153360 38816729 ~ 38827785 (+) True tgoln2
XM_039802712.1 mRNA downstream 153360 38816729 ~ 38827402 (+) False tgoln2
XM_039804598.1 mRNA downstream 168718 38832087 ~ 38837575 (+) True LOC120561457
TU90637 other upstream 60131 38595811 ~ 38598473 (+) False G67824
unassigned_transcript_271 other upstream 226940 38431592 ~ 38431664 (+) True trnaf-gaa_6
TU90566 other upstream 251081 38361472 ~ 38407523 (+) False nkx6.3
TU90405 other upstream 929946 37723261 ~ 37728658 (+) True LOC120560165
TU89972 other upstream 2177311 36478252 ~ 36481293 (+) False LOC120560081
TU90882 other downstream 746869 39410238 ~ 39413981 (+) True G68023
TU90883 other downstream 746869 39410238 ~ 39413981 (+) False G68023
TU91051 other downstream 1470423 40133792 ~ 40142482 (+) False vps33a
TU91053 other downstream 1481390 40144759 ~ 40150677 (+) False vps33a
TU91064 other downstream 1570104 40233473 ~ 40234591 (+) True G68173

Expression Profile