RNA id: XM_039804098.1


Basic Information

Item Value
RNA id XM_039804098.1
length 927
RNA type mRNA
GC content 0.61
exon number 3
gene id nkx6.3
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 38355603 ~ 38407523 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTTGCTGAGACCTGCAGGCAGAGTTCAAAAAAGTACTCCCCATGGATCCAAACATCCAGGGGTCTTTCCTGTTCAACAACAGCCTGAACCAGTTCCCCTCGGAGCTCAAGGCCCCGGTGTGCCAGTACTCGGTGGCCAACTCTTTCTACAAGCTCAACCCGGGCCTGAACAGCCAGCTGCAAGCAGCGGGGACGCCGCACGGCATCAGCGACATCCTGAGCCGCTCCATGATGGGCATGGGCTCGGCGGGCACCACCACGCTGCTGTCCGGATACTCCACCGTGGGAGGGTTCAGCCCCTCCGTCACGGGCACGTCCATGTACTATAATAACCGGGACTACAGCTCGTCTCTGGGCGGGTTCTCCAAGCCCGGCGCCGAGTGCCCGATGAAGGGTCGCAGCGTGAGCTGCTGGGCGGAGAGCGGCTGCGACTGGAGAGCCGGGAGGCAGCAGTGCAGCAACAGTAGCGGTCCTCTGACGGACATGTCAGGCAGGAAGAAACACACCCGACCGACGTTCAGCGGACATCAGATATTCGCTCTGGAGAAAACCTTCGAACAGACCAAGTACCTGGCCGGGCCGGAGCGAGCCAGGCTGGCTTATTCTCTGGGCATGACCGAATCTCAAGTCAAGgtgtggtTTCAGAACCGACGCACCAAGTGGCGGAAGAAGAGCGCCTCCGAGCCGAGCTCCACGCAGGCCAGCCTCGCGGGCCCGGGCGGCGACGCTTCGGACCACGAGGTGGAGGACGAGGAGTACAACAAGCCTCTGGACCCCGACTCCGACGACGATAAGATCCGGCTGCTGCTACGCAAACACCGCAGGGCTTTCTCCGTGCTGCGCCTCGGGCCACACAACGTCTGACAGAACTTGCTGCAAatcacacacgcgcacgcacacacgcacatacacacacgcaaaaacata

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90542 lncRNA upstream 2767 38245719 ~ 38352836 (+) True G67740
TU90558 lncRNA upstream 18565 38336149 ~ 38337038 (+) True G67753
TU90553 lncRNA upstream 32213 38318136 ~ 38323390 (+) False si:ch211-214j8.12
TU90549 lncRNA upstream 66867 38288209 ~ 38288736 (+) True G67745
TU90541 lncRNA upstream 111057 38244302 ~ 38244546 (+) True G67739
TU90563 lncRNA downstream 11161 38377064 ~ 38384624 (+) True G67758
TU90564 lncRNA downstream 11161 38377064 ~ 38384624 (+) False G67758
TU90571 lncRNA downstream 48335 38414238 ~ 38469587 (+) True G67764
TU90573 lncRNA downstream 51624 38417527 ~ 38431080 (+) True G67765
TU90574 lncRNA downstream 56458 38422361 ~ 38514016 (+) True G67766
XM_039804048.1 mRNA upstream 32107 38309603 ~ 38323496 (+) True si:ch211-214j8.12
XM_039803432.1 mRNA upstream 51637 38263367 ~ 38303966 (+) True gda
XM_039803807.1 mRNA upstream 97487 38248027 ~ 38258116 (+) True c6h9orf85
XM_039802305.1 mRNA upstream 277703 38075066 ~ 38077900 (+) True nkx3-1
XM_039804515.1 mRNA upstream 301631 38050339 ~ 38053972 (+) True nkx2.7
XM_039802691.1 mRNA downstream 161837 38527740 ~ 38545362 (+) True LOC120560325
XM_039802695.1 mRNA downstream 213510 38579413 ~ 38586296 (+) True si:dkey-31c13.1
XM_039802696.1 mRNA downstream 213510 38579413 ~ 38586296 (+) False si:dkey-31c13.1
XM_039802709.1 mRNA downstream 346382 38712285 ~ 38801716 (+) True tcf7l1b
XM_039802710.1 mRNA downstream 346382 38712285 ~ 38801716 (+) False tcf7l1b
TU90405 other upstream 626945 37723261 ~ 37728658 (+) True LOC120560165
TU89972 other upstream 1874310 36478252 ~ 36481293 (+) False LOC120560081
unassigned_transcript_269 other upstream 2179052 36176479 ~ 36176551 (+) True trnaf-gaa_4
unassigned_transcript_268 other upstream 2194132 36161398 ~ 36161471 (+) True trnai-aau_2
TU89793 other upstream 2336350 35871423 ~ 36019253 (+) True G67152
unassigned_transcript_271 other downstream 65689 38431592 ~ 38431664 (+) True trnaf-gaa_6
TU90637 other downstream 229908 38595811 ~ 38598473 (+) False G67824
TU90882 other downstream 1044335 39410238 ~ 39413981 (+) True G68023
TU90883 other downstream 1044335 39410238 ~ 39413981 (+) False G68023
TU91051 other downstream 1767889 40133792 ~ 40142482 (+) False vps33a

Expression Profile