nkx3-1


Basic Information

Item Value
gene id nkx3-1
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 38075066 ~ 38077900 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802305.1
ctgctgctgcagccACTGAGAGGTTTCTCTCTGGTTTATGGTGGATAACTGGATGGAAATGACCGTCCCAGTCAGACCTCTGACCTCCTTCCTCATAGAGGACATCCTGTCCACGGAGGACGGCACAAGTTTTAACAGCAAACGCTGTTCCCAGAAGAGGGAAAGATGCACCCAATGGGAGGAAGGAGCCGAGAAGTTGTCGGAGCAACGATGCCGTCAGGAGACGGCGTTCGGAGTTCAGACAGCGTCTGTGGACCCGCCCCGCCCCGGCTCCTCCGAGTCCGGcagcttctcctcctcctcctcggcagGGGGGAAGCAGAAGCGCTCCAGAGCTGCGTTCACACACCTGCAGGTGCTGGAACTGGAGAAGAAATTTAACCACCAGAAATACCTGTCGGCCCCGGAGAGGGCTCACCTGGCCGGCACCTTAAGACTAACGGAGACGCAGGTGAAGATCTGGTTTCAGAACCGCAGGTACAAGACCAAACGGAAGCAGCAAACCTCCCAGTTCTGCAGGGACGTGTGCAAAGCAGAGGGACTGGGAGACGAGCTGCTTCGATCGTCCCTGATCTCGTCCTTCTGCAAAGTGTACCAGTACAGACCCTACCTGTGGGACTACAGCGGCCCCTGGGGGCCGACGCTATGGTGACCGGGAAATAATCAGGCGGCTCTCATGAGCCATCGTACATAAAGCTACGAAGAGTAACGTAAAGGACTGAAGTACTGCATGGGAGAAGGTCGGAGTGGATGGCtaggtcataaaacacagggctcTCAATCGGGAGAGGGACACAGGGCTCTCAATCGGGAGAGTGGCGTTCGAGTCCcgggggaaaacacaagactttcaccccaTGAACTATTCATATATCAAAATAAAGCACTGTGATTCCTATTTGTTTTCCAGCCATAGGCGTAATTTAGGGGATCAGGGGGGTTGCAACCCCCAATAATAGAAAGAACAGAAGTTGTTGTTACTTTTCAATGTTATTGCCGCTTGATTCAACGTTTCAACGTTCAagtttttatcttatttttcaagtttttttggacaatttctttatttttttgtggacCTTttcgatgtttgtttttttggccaATTTTTTCGAAgcct

Function

NR:

description
homeobox protein koza-like

GO: NA

KEGG:

id description
K09348 NKX3-1; homeobox protein Nkx-3.1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802305.1 True 1120 mRNA 0.51 2 38075066 38077900

Neighbor

gene id symbol gene type direction distance location
nkx2.7 NA coding upstream 21094 38050339 ~ 38053972 (+)
stc1 LOC103362328,LOC104965051 coding upstream 48019 38015375 ~ 38027047 (+)
ido1 LOC104931154 coding upstream 124367 37940919 ~ 37950699 (+)
acsl2 LOC104964461,LOC103362322 coding upstream 312851 37729826 ~ 37762215 (+)
LOC120560164 LOC104964460,LOC103362321 coding upstream 357437 37708211 ~ 37717629 (+)
c6h9orf85 csgr18h9orf85,clg9h9orf85,LOC105926787,LOC101078288,LOC103145608,LOC106963215,LOC102236857 coding downstream 170127 38248027 ~ 38258116 (+)
gda gda coding downstream 185467 38263367 ~ 38303966 (+)
trnaf-gaa_6 NA coding downstream 353692 38431592 ~ 38431664 (+)
LOC120560325 phyhip,LOC102233080,LOC104946538,LOC100707279 coding downstream 449840 38527740 ~ 38545362 (+)
si:dkey-31c13.1 NA coding downstream 501513 38579413 ~ 38586296 (+)
G67697 NA non-coding upstream 60267 38014592 ~ 38014799 (+)
G67686 NA non-coding upstream 85529 37989246 ~ 37989537 (+)
G67669 NA non-coding upstream 138207 37921724 ~ 37936859 (+)
G67666 NA non-coding upstream 161031 37913633 ~ 37914035 (+)
G67661 NA non-coding upstream 251697 37823071 ~ 37823369 (+)
G67712 NA non-coding downstream 35140 38113040 ~ 38144615 (+)
G67713 NA non-coding downstream 37011 38114911 ~ 38146223 (+)
G67718 LOC104966820 non-coding downstream 98972 38176872 ~ 38180835 (+)
G67723 NA non-coding downstream 107990 38185890 ~ 38186960 (+)
G67722 NA non-coding downstream 125137 38203037 ~ 38203834 (+)
LOC120560165 LOC104964460,LOC103362321 other upstream 346361 37717903 ~ 37728705 (+)
trpm3 trpm3,LOC103470491,LOC103145554,LOC106928040,LOC101476865,LOC100708457 other upstream 1582371 36241579 ~ 36492695 (+)
LOC120560081 NA other upstream 1593755 36477798 ~ 36481311 (+)
G67152 NA other upstream 2051802 35871423 ~ 36023264 (+)
G67145 NA other upstream 2220905 35841534 ~ 35854161 (+)
si:ch211-214j8.12 NA other downstream 231703 38309603 ~ 38323496 (+)
nkx6.3 nkx6-3,LOC102787307,LOC104940825,LOC102218504 other downstream 277703 38355603 ~ 38407523 (+)
G67824 NA other downstream 517911 38595811 ~ 38601821 (+)
G68023 NA other downstream 1332322 39410222 ~ 39461478 (+)
LOC120560010 sds other downstream 1784563 39862463 ~ 39878496 (+)

Expression


Co-expression Network