RNA id: unassigned_transcript_269


Basic Information

Item Value
RNA id unassigned_transcript_269
length 73
RNA type tRNA
GC content 0.53
exon number 1
gene id trnaf-gaa_4
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 36176479 ~ 36176551 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gccgaaatagctcagttgggagagcgttagactgaagatctaaaggtccctggttcgatcccgggtttcggca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89897 lncRNA upstream 47484 36120895 ~ 36128995 (+) True G67219
TU89894 lncRNA upstream 80356 36094815 ~ 36096123 (+) True G67216
TU89879 lncRNA upstream 116993 36055684 ~ 36059486 (+) True G67202
TU89802 lncRNA upstream 278296 35895179 ~ 35898183 (+) True LOC120560688
TU89957 lncRNA downstream 81155 36257706 ~ 36257913 (+) True G67263
TU89955 lncRNA downstream 253016 36429567 ~ 36492695 (+) False trpm3
XR_005639418.1 lncRNA downstream 301247 36477798 ~ 36481311 (+) True LOC120560081
TU90029 lncRNA downstream 430046 36606597 ~ 36609794 (+) True G67326
TU90093 lncRNA downstream 835287 37011838 ~ 37030131 (+) True G67373
XM_039804045.1 mRNA upstream 141139 36027310 ~ 36035340 (+) True LOC120561090
XM_039803348.1 mRNA upstream 380245 35789091 ~ 35796234 (+) False rnf214
XM_039803347.1 mRNA upstream 380245 35789684 ~ 35796234 (+) True rnf214
XM_039804555.1 mRNA upstream 492935 35675371 ~ 35683544 (+) True LOC120561433
XM_039803306.1 mRNA upstream 556613 35613919 ~ 35619866 (+) True LOC120560626
XM_039803579.1 mRNA downstream 1678 36178229 ~ 36217618 (+) True cemip2
XM_039803041.1 mRNA downstream 65028 36241579 ~ 36434202 (+) True trpm3
XM_039803036.1 mRNA downstream 65030 36241581 ~ 36429696 (+) False trpm3
XM_039803042.1 mRNA downstream 107521 36284072 ~ 36434202 (+) False trpm3
XM_039803035.1 mRNA downstream 107521 36284072 ~ 36434202 (+) False trpm3
unassigned_transcript_268 other upstream 15008 36161398 ~ 36161471 (+) True trnai-aau_2
TU89790 other upstream 153215 35871423 ~ 36023264 (+) False G67152
TU89793 other upstream 157226 35871423 ~ 36019253 (+) True G67152
TU89780 other upstream 322318 35841534 ~ 35854161 (+) False G67145
TU89779 other upstream 322318 35842078 ~ 35854161 (+) True G67145
TU89972 other downstream 301701 36478252 ~ 36481293 (+) False LOC120560081
TU90405 other downstream 1546710 37723261 ~ 37728658 (+) True LOC120560165
TU90566 other downstream 2184921 38361472 ~ 38407523 (+) False nkx6.3
unassigned_transcript_271 other downstream 2255041 38431592 ~ 38431664 (+) True trnaf-gaa_6
TU90637 other downstream 2419260 38595811 ~ 38598473 (+) False G67824