RNA id: XM_039804045.1


Basic Information

Item Value
RNA id XM_039804045.1
length 3959
RNA type mRNA
GC content 0.39
exon number 9
gene id LOC120561090
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 36027310 ~ 36035340 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGACCTTGAGTCTGGCAATaaagttgatgatgatgatgatgatgatgatgatgatgatgttttccttttttatttgcatttcgtTCTGGCATGGCCTCAGGTCCTGACTATTACATGTAGGCGGATATATAAACACTGGATTTTCTCTTGTTCAGCACCAGGAAGGCTGAAGCCACACACTGACACTGAGATAGACGAAGAGAAGATCATTCTGAAACAGGTTACCATCATCCTTAACAACTCCGCCATGAAGATGCTGACTGTGTGTGCACTTCTGTGTGCAATGGTGGCTCTGACTGGAGCTTATCCAGGCATTTTGAAGGCAACTCAAAATCCAATTCCAACAGacacagatacgACTACTACGACTATTACTACGACTCCAAATTTGCCTGTAACAGAGGACCCTTTTGGTGGCTGGAGGCCATATTGTCCTGACGGTTGGACAATGTTCAACACTCGTTGTCTCCTCTACGTTCCAAAGAATATGACTTGGGCTCAAGCTGAGCAACACTGCAGGTACATGACTGGAAATCTTGCATCTGTAATCAACACTGAGTACTCTGACCAGATTCAAAAGGTGTTGCAGAGTGCCGGTCAAAAGTCTAAACAGATATGGGTTGGAGGCTATAATACACCAGAGCGTTCTTGGTCCTGGACCGATCCTTATTTATTTCACGGATTTCATGACTGGTGTATCCACTCCGATGTGGAGCCCGAGAACCCCACTGTGGAGTCCAAGAACCACTGTCTACAAATAACCTTTGAAGAAAATGCGTCAGGATGCTTGGACGACATGCAGTGTGATGCTGAGCTcccctcagtctgcagcattatCATCATGTGAATCCTGGGCTGAAAAAGAGGCAAGATCCATCTGTATCTTACagctttatttcttttctcttgCTTTAATGCTTCTTAAGGAACGAAGTCAACTGACCCAAAGAGGAGCTGAATTGTCTCTTAGAGTCTGTTTACACTTGGTTAAAATGAAGTAATCCGAGGACAAGTTAACAGCTGAGATACATCGCTGTTCACATCTGTGTCTATCATGCATCTCCAGCTGACCACTTGTGTTCACATTTCTTTTCTGCCTACATCACTGCcaaaggtatatatatatatatatatatatatatatatatatatatatatatatatatatatattaacatatatacatgcacacacacacatatatatacgtGTATATatcatgtatatatatagctgTGGCAGTGACGTAGGCAGAAACGAAATGTGAATGTAGCTGATTAGCCTaaggcatggtctaaaactctttatacaGATTTTTCTAGAtgtcaatgggagaaatgaatgggaaatttacttcaGGATCCCAAGGCCTCTCGTAGGAGGGGCGAAGCAATTGAGCTCTATTGTGTTCAAATTTCGTTTCTGCCTACGTCACTGCtacagctatatatatatatatatatatatatatatatatatatatatatatatactgtatatatcgcTGTCAGCTGAATCAAACACATCTCCTTCCAAATGGCAAAACTATGGACTATCACCAACAATTTGTCCAATTCATTGTAAAATGGGCCAGTTATAGAGGGTTGTCACACTGTCACCGCAACAACAACCTGTCCTGCATTGATAACGTATTTTCCTGTTAATGCCTTGTCAGGGACACATCAGGGCGCATTAGCGTTTACACTACAGAAAAAATGTGGTCAAATGCGTCACAGACCACCTCGGCAAGTGGTTTGAGTGATCGGATCACAATGCATCTTGGTTTAACACTGTCCACTCGTGATCTGATCGCCCAAgacacattttataaaacacaGCGTAACCAGGATCTTATATCTCATGACTTTAAAAAAGAGCAGACCGAATGCTTTTAGCACAACTTTAGTCTGCTTTAGTAACAGACTGGCAATTACTCAAGTGGAAATATGGAAAATGATCCTGAATTCGATACGagacaacaaaaaacatttgacacCCGATTTTGAGAGAGTAAACTATCATAAAAAGCGATGAGGCAGCATTTATTTGTTAACAGCCAACtactaaaaacaacaattttttttatctatacAGTTTTGATGAGTTGCCTGTAGAGCATTTAGCtgtaatttgtgtttttctgcagCCTAAGAGACATGTAAACACAAAGTTTGATTCAATCAGAGAGTTGATGATGTGTTTCGGCGGTGTTGGCCTGAGGAGGTGAGGACAATGGCGGACACATTTGAATACATACCCAGTTCCGGCCATGGACGGACAGTCAAACTGTGGACTTCTGAACAACACAGACATTTAAAACGACCCCTCCTTCTTCTTCAGTGACATTTTGCAGAAGTACACAAGCTCTGAATTCTAGCTGCTGGATGAAAACCCGACCTCACTGAACATTCCCTCACAGTACTAAACCTGAAacatgagcttttttttttcaaataagaaAAGTTGGGTTCCTTTTGTTGGCTTGAACAGATGTGGTTATTAAATACTACACCTGTGTTTAACTCTGATTTATTTTCAGACAGTAAACCTTTGTTTCTTCTCTCATTGTAGCGTTATAGATAATTGAGATCAGATTGTGTTGTTGGACATGGACATGGTTTAAATTGAAAGACTTGTTGGAGATTCCACAGTAACTCTTTGTAGCTTTAAAGTGAACAAACTTTAAACAAACCGTTTTGGAGACTCAAATTCCTGTTTCTTTTAATTCGGAGCGAGGCAGAAGGGGTCATGTAGAAAATGTAGTGTGTATGCGCAAAATAATAAACTGTGGTCTCAAATTATAAAATCATGCTTTTAGGCCAAACATTAAATGGTAcggtttaatatttttatagaCAGAATCTGAAGTAATTTGTTTTCTGATGGATGCAGGTGTCACTGAGAGTCAACACATTCAGAGTCAACACTGTTCACATTCAAGCAAGCTTTATTAATGCTATAATGCAGATTGATAACATGAGATATGAGCTCGGCTATATACAGCTCTGCAGGTACGTGTGGTTGTCGAGAACAAGTACACACACTGTGTGGATATACACTCTATACAGCATTCACCAACAAAAAGACACATTAGTTTGTAAGTCTGAGCAGGATTTACATCAGCATCTCATTTTGTCTCCATCTTGTGGTATTTTTGGTTAAATTCAGTTTGGGgacataaaatgtaaaaacaatctGAAAAACCTGACTTCATTTCGACTAAAATAATCTGGTTCATTTGTTTTACGACAGATCTAATAATCAGTTTTTGCTTTAACCAGGTTATAATTGAATTGATTACGTCACGTGCAACTTAAACTTCATTCTTCTGTAGCGCTCCCCGTTTCGTCCGTTTGTGTTCATTTTCAAGCTTATATGAGTTCATCTCAGTAGCTGcaagaaacaaaagaacaacaaaatcaaTCACTAATTGATcattaaacctacattgtgtaattgtttgagttgattcttagcaaaaaaaactttgttctttcacaaatatgtgctcattcatgtgtaattacttccccCAACTAATCAatgtattctcgtaagcgttagagaatttttgtgttttacaatcattcagaatacatacgagcgagtcgctGGAATGACGGCCGGCATGTtgtgcctccatctttaaaatacatcagccaaagagggacatacctccgccttttgCCCTTTTACACTCAGTTGCACcatgacgaatgccagggggagattacagGCAAAGCATCAAGactaaagttaatattggaATATAGCAGTTAAAACGTgatcggaatgggaggggctagaaagtaatattcagttggttgtcatatactatttcaccgctagatgggaggaATTATTaaacaatgtagctttaaagatTGGCAGATGATGTTAGATACTAGGTTGAAAATATATTATCAGTTCTCTCTTTTCTGTCATATTGAAAGGAAC

Function

GO: NA

KEGG:

id description
ko00983 Drug metabolism - other enzymes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89791 lncRNA upstream 33934 35871423 ~ 35993376 (+) False G67152
TU89802 lncRNA upstream 129127 35895179 ~ 35898183 (+) True LOC120560688
TU89804 lncRNA upstream 130299 35895179 ~ 35897011 (+) False LOC120560688
XR_005639503.1 lncRNA upstream 130953 35895151 ~ 35896357 (+) False LOC120560688
TU89792 lncRNA upstream 149585 35871423 ~ 35877725 (+) False G67152
TU89879 lncRNA downstream 20344 36055684 ~ 36059486 (+) True G67202
TU89894 lncRNA downstream 59475 36094815 ~ 36096123 (+) True G67216
TU89897 lncRNA downstream 85555 36120895 ~ 36128995 (+) True G67219
TU89957 lncRNA downstream 222366 36257706 ~ 36257913 (+) True G67263
TU89955 lncRNA downstream 394227 36429567 ~ 36492695 (+) False trpm3
XM_039803348.1 mRNA upstream 231076 35789091 ~ 35796234 (+) False rnf214
XM_039803347.1 mRNA upstream 231076 35789684 ~ 35796234 (+) True rnf214
XM_039804555.1 mRNA upstream 343766 35675371 ~ 35683544 (+) True LOC120561433
XM_039803307.1 mRNA upstream 407444 35613850 ~ 35619866 (+) False LOC120560626
XM_039803305.1 mRNA upstream 407444 35613852 ~ 35619866 (+) False LOC120560626
XM_039803579.1 mRNA downstream 142889 36178229 ~ 36217618 (+) True cemip2
XM_039803041.1 mRNA downstream 206239 36241579 ~ 36434202 (+) True trpm3
XM_039803036.1 mRNA downstream 206241 36241581 ~ 36429696 (+) False trpm3
XM_039803042.1 mRNA downstream 248732 36284072 ~ 36434202 (+) False trpm3
XM_039803035.1 mRNA downstream 248732 36284072 ~ 36434202 (+) False trpm3
TU89790 other upstream 4046 35871423 ~ 36023264 (+) False G67152
TU89793 other upstream 8057 35871423 ~ 36019253 (+) True G67152
TU89780 other upstream 173149 35841534 ~ 35854161 (+) False G67145
TU89779 other upstream 173149 35842078 ~ 35854161 (+) True G67145
TU89783 other upstream 175254 35840874 ~ 35852056 (+) True G67146
unassigned_transcript_268 other downstream 126058 36161398 ~ 36161471 (+) True trnai-aau_2
unassigned_transcript_269 other downstream 141139 36176479 ~ 36176551 (+) True trnaf-gaa_4
TU89972 other downstream 442912 36478252 ~ 36481293 (+) False LOC120560081
TU90405 other downstream 1687921 37723261 ~ 37728658 (+) True LOC120560165
TU90566 other downstream 2326132 38361472 ~ 38407523 (+) False nkx6.3

Expression Profile