RNA id: TU90093


Basic Information

Item Value
RNA id TU90093
length 260
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G67373
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 37011838 ~ 37030131 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtttgaaagccatgatgtctctctctcatgggttggccaaattctctgggtgggcaaagcagagaaaggggaggtaaccttgctccttatgaagattccagatcggcccatctgagctttcattttctcaaaggcagagcaggatacccagggctcggtttacacctatcaccatttctagccactgggggaccataggcaggctgggggaactcatattaatgttaaaaaacctcataaagtgaaattttcatgccatg

Function

GO:

id name namespace
GO:0006376 mRNA splice site selection biological_process
GO:0000245 spliceosomal complex assembly biological_process

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90029 lncRNA upstream 402044 36606597 ~ 36609794 (+) True G67326
TU89955 lncRNA upstream 519143 36429567 ~ 36492695 (+) False trpm3
XR_005639418.1 lncRNA upstream 530527 36477798 ~ 36481311 (+) True LOC120560081
TU89957 lncRNA upstream 753925 36257706 ~ 36257913 (+) True G67263
TU89897 lncRNA upstream 882843 36120895 ~ 36128995 (+) True G67219
TU90117 lncRNA downstream 277109 37307240 ~ 37310186 (+) True G67394
TU90263 lncRNA downstream 314331 37344462 ~ 37345076 (+) True G67522
TU90271 lncRNA downstream 353457 37383588 ~ 37383822 (+) True G67530
TU90307 lncRNA downstream 448008 37478139 ~ 37478868 (+) True G67563
TU90312 lncRNA downstream 472571 37502702 ~ 37504728 (+) True G67568
XM_039802605.1 mRNA upstream 32215 36803550 ~ 36979623 (+) True adgrv1
XM_039802606.1 mRNA upstream 32215 36803550 ~ 36979623 (+) False adgrv1
XM_039802604.1 mRNA upstream 214664 36789748 ~ 36797174 (+) True polr3g
XM_039802603.1 mRNA upstream 214664 36789748 ~ 36797174 (+) False polr3g
XM_039804047.1 mRNA upstream 229466 36770993 ~ 36782372 (+) True LOC120561092
XM_039802193.1 mRNA downstream 410 37030541 ~ 37037965 (+) True arsk
XM_039802191.1 mRNA downstream 8018 37038149 ~ 37062515 (+) True ttc37
XM_039803571.1 mRNA downstream 36286 37066417 ~ 37110400 (+) False sorbs3
XM_039803570.1 mRNA downstream 39523 37069654 ~ 37110400 (+) True sorbs3
XM_039803572.1 mRNA downstream 39523 37069654 ~ 37110400 (+) False sorbs3
TU89972 other upstream 530545 36478252 ~ 36481293 (+) False LOC120560081
unassigned_transcript_269 other upstream 835287 36176479 ~ 36176551 (+) True trnaf-gaa_4
unassigned_transcript_268 other upstream 850367 36161398 ~ 36161471 (+) True trnai-aau_2
TU89790 other upstream 988574 35871423 ~ 36023264 (+) False G67152
TU90405 other downstream 693130 37723261 ~ 37728658 (+) True LOC120560165
TU90566 other downstream 1331341 38361472 ~ 38407523 (+) False nkx6.3
unassigned_transcript_271 other downstream 1401461 38431592 ~ 38431664 (+) True trnaf-gaa_6
TU90637 other downstream 1565680 38595811 ~ 38598473 (+) False G67824
TU90882 other downstream 2380107 39410238 ~ 39413981 (+) True G68023

Expression Profile