RNA id: TU90117


Basic Information

Item Value
RNA id TU90117
length 2882
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G67394
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 37307240 ~ 37310186 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTTTAGCTAATTCAATAgcaatcgcaatatctggcGGAAAAATCTCAATTAGATTTTCTCCttaaatcgttcagccctagttcaTATCAACGACGTTGCTCAGTGTTTATAGAGTAGTGGTTCGTAATGTGACTACCCCCTCCCCAGGGGTATGGATgggtttaaaagtaaaatataacaatGTTATTATGTCAGTGCTGTTTAAATTTCAACATAATGCACTCatgttttttacattattacGGCCTTTCTTTACTTCCACAGTGGTGAGTtggcacacagagaacacatgACCAATGTTGCACAGTTTCATAATATTTTATTTGTCAATGCAGCGGATGATGTAATGTGGGTGATAACGAAAGACAAGGTGTCTCGATGTAACACAATAATGGATGAGGTGAAGGTGATGTTTCATCCATTAAgtccattattttattttgacatttcagAGTGTGTTGTTGAACTTATACCATGGCCGCTTACCAAAGGTCAACCCAATTCTCACCCCCAACTagtcaaatactgacgcttggtcagtggttGCTCAGCGacagataccgacgcaaaaggcactagggctgggtattgccAGGGATCGATTTTATTCCCGATTCGACTTTAttccaattcaattttattttcgATTTGATATATTTGATATCAATTAGGTCAGGAACATTTCAGTTACTATACCAATTTAGCTTGGGAATTAAAGAGATTCTACAATTGTACAAGGTTCCCTCTAACCTGCCGCATTATTAAAAGTATCAATGAAAAACTGACCCCAAAGCAGTTACAttaatactttttatttaacataaacGCACAAAGTGCCGCTCTACAGAGTCTACACTCAGTGAGTTTTGAGTGACATTTCATTTAGATATCCTAAAGGTAACAGAGGGACCCCTATGAAAATGGCCATGTTTTCCCTCACCAAAATGTAGCCTATCTTTGGAGGGTTATTAGGTAACCCCCTTTCCGGCACGCTAACATGACATAGTCGGTACCAATGGTCTTTTAGTTTCATGTGATACAGACAAAGATTGGTTCTTGGATTTTATGAAACGATTTTggatcattcaaatgaaaatcgGAATATCGTTATTTTTTAATCCCAGCCCTAAAAGgctcgaccgcggcgctgtaagatgacgtagtatgaaGAGCGATAATGacagcgagtagtatgaaagactgaAAATCTGTGTAAGGAGGcatgttggggtggtggatgggtcaaaacaACACTTACGGGACAGTTAGTCCTAACTgtctgtcccgttcttgtcccgcatgTCCCAACCCACGATATTTTCCTAACCTTAACTTAATGGTTTTCCCCTGCTCCCAAAAAATTCCGCCAAATcggtcccgacccagagcgtcaaaaagtggcACCAACGGTCCTGACAAAACGCGTCGATAAATGAAGCCAAAGGGCGACCGTGAGGGTCAAATATCGCCACAGGTGGGATTACGTTGGGATGAGTTGAAAGCCCCCTACGTCTGactgagacgctaaaggagactttttgacCAAGCATTAGTTTTTGATGCCTGGAAGTGAGACTGTTGCAAAGGTAGAGAGTTTACTGGTAGCATGGAGCAGGAGTGTTATGTATGGCCACCTGCAGTTTGTAATTCTGTACCTTGCGCAGtaattggtaacactttacaataaggtacacaaaaaaataggtagttactgtttttgaaagggtagttaccctttttcagaagggtaacgaatgattagttaccctttttcagaagggtagttacccttttttagaagggtaacgaatgattagttaccaTTTTTCAGAagagtagttacccttttttaGAAGgatagttactgtttttcagaaggatAGTTACCCTTTTTTAGAAGGGTAATGAATGATTAGTTACcatttttcagaagggtagttacccttttttaGAAGgatagttactgtttttcaaaaGGATAGTTACCCTTTTTTAGAAGgatagttactgtttttcagaaggatAGTTACCCTTTTTTAGAAGGGTAACAAatgattagttaccctttttcagaagggtagttacctattttttgtgtaccttattgtaaagtgttacccagtAATTTATAGTAATGGTTAACTGATGAGCGGAATCATGTTTGAGTTGTCCTGATGTAAGATATAAACAGCCAACCAATCGGAAATGAACATGTTCCATAGCCATGGTATACCTTAACATAGACGAAGAGATTAAAGCGAGATAACTATTGTGTGGATGCAGAGTCTAGGCTCAAAAACAGACCGATCAAGACTAAAAACAGACACCAGTATTGTTGAATAtatgaatgcacacagcccTTTGGTTTAGCTCCTATTTTTACGCTGACAAGTCTGTGCCATGACAGTGAAGACAGCCATGCCAGAATCATGACCATGTAATAAGTTAAAAGTTGCTACAGATTCAGTGTATCAAAATAACTTACCAGATAATATACTGTAAAACATTAGTCCATGCTGTCATTTTTGAAACCACAGGCCACATACGCTGTGTCCAAAGGTCAACTGGAATGCATTTCAAACGTGCAGTTCAGGACACTTTGTTGTCACCTAATGTCAAGTGAAGTGCTGTGCTGCCGCAGTCTGTCTCCTGCCCACGGAGACGGTCACAGTGTTCCTGTCCAGACCAAATCAGCTGTTTGTCTTCAGTGGGTCCAGTCATCTCTTTGGGGTTAGCTACATTCAGCCAGGTTTATCAGGGCCGCCGGCTGTGCTTTTCTTCAGCCTGCCCTCCCTGCTGTTTGGTCTCAGCCTCCGCGGGGATCACACTAACGGCTGGGGAGCATAGTTTGCTTCAGTAGCTCGACTTTTCTACAGTTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90093 lncRNA upstream 277109 37011838 ~ 37030131 (+) True G67373
TU90029 lncRNA upstream 697446 36606597 ~ 36609794 (+) True G67326
TU89955 lncRNA upstream 814545 36429567 ~ 36492695 (+) False trpm3
XR_005639418.1 lncRNA upstream 825929 36477798 ~ 36481311 (+) True LOC120560081
TU89957 lncRNA upstream 1049327 36257706 ~ 36257913 (+) True G67263
TU90263 lncRNA downstream 34276 37344462 ~ 37345076 (+) True G67522
TU90271 lncRNA downstream 73402 37383588 ~ 37383822 (+) True G67530
TU90307 lncRNA downstream 167953 37478139 ~ 37478868 (+) True G67563
TU90312 lncRNA downstream 192516 37502702 ~ 37504728 (+) True G67568
TU90315 lncRNA downstream 235726 37545912 ~ 37547224 (+) True G67570
XM_039803429.1 mRNA upstream 47930 37233747 ~ 37259310 (+) True rab11fip1a
XM_039803430.1 mRNA upstream 47930 37233747 ~ 37259310 (+) False rab11fip1a
XM_039804177.1 mRNA upstream 75425 37160244 ~ 37231815 (+) True adgra2
XM_039803981.1 mRNA upstream 155582 37111859 ~ 37151658 (+) True pdlim2
XM_039803982.1 mRNA upstream 155582 37115454 ~ 37151658 (+) False pdlim2
XM_039802910.1 mRNA downstream 78473 37388659 ~ 37421883 (+) True LOC120560422
XM_039802912.1 mRNA downstream 78473 37388659 ~ 37421883 (+) False LOC120560422
XM_039802917.1 mRNA downstream 78473 37388659 ~ 37421883 (+) False LOC120560422
XM_039802913.1 mRNA downstream 78473 37388659 ~ 37421883 (+) False LOC120560422
XM_039802918.1 mRNA downstream 78473 37388659 ~ 37421883 (+) False LOC120560422
TU89972 other upstream 825947 36478252 ~ 36481293 (+) False LOC120560081
unassigned_transcript_269 other upstream 1130689 36176479 ~ 36176551 (+) True trnaf-gaa_4
unassigned_transcript_268 other upstream 1145769 36161398 ~ 36161471 (+) True trnai-aau_2
TU89790 other upstream 1283976 35871423 ~ 36023264 (+) False G67152
TU90405 other downstream 413075 37723261 ~ 37728658 (+) True LOC120560165
TU90566 other downstream 1051286 38361472 ~ 38407523 (+) False nkx6.3
unassigned_transcript_271 other downstream 1121406 38431592 ~ 38431664 (+) True trnaf-gaa_6
TU90637 other downstream 1285625 38595811 ~ 38598473 (+) False G67824
TU90882 other downstream 2100052 39410238 ~ 39413981 (+) True G68023

Expression Profile