RNA id: XM_039802913.1


Basic Information

Item Value
RNA id XM_039802913.1
length 6424
RNA type mRNA
GC content 0.48
exon number 20
gene id LOC120560422
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 37388659 ~ 37421883 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagcattcTTCCCACTAGCATTTACTGTTTGTAGCTACGTTAGCTCTGTCATTAAGTCAGTTCACCAGCCTTCATACAGCCTGCTGGACGCATAAAAGCAGTGGAGGTCATCTTTAACTACGATACAGACGAGTAGAGCAGCAGGTGAACATTTCGGGTGCATGATATCGGTTGAGATGTGTAATAAGCTGCATTGGACATTAAGGTCCTACCTGGCTATCAGCCTATCAACTGACAGCTGTCACCGCACCTAGCTGCTTAGCTAGCTGCATAGGTGAGCTAACGGCTAACAAGTGTTTTTCGGGCGAATTTAGCCAGGCAGTGCTGCTCTCCGTTCAGAGTGGAAACCGGTGACTTCCGCATGAACGTTATAACTATCTCAGTATTTTCTCAACAATATTCGACTCCGCCTGCTGTTCAAATGAGTTAGCCAAAGAGCGTCGGACCGCAGTGTTTGGGATATTTTGAGGTccagctagttagctagcatTTAGCTTTAAGCTAGCTGACTAAATTCATTCAATTATTGAAAACCTGCTAAAGCGCTAACGTTAACACCAGAGCCTCAACGAACAGTTTTATCCAATCACAGTTGTTCTGCTACTAATATATATTGGACTTGGCCGTGCTTTGGATAACCtcggggggggggaaatgaAGAAATTTTTTGATTCTCGTCGGGAGTTGGTGAGCTCTGGGCCGGGCTCCGGAGTCGGTGGAGGAGGCGCTGGTTCCGGCGGCGGTGGCAGCTTCATCGGAAGGGTCTTCACCATCGGACGATATCAAGTGACCGTCGAGGAAATCGTCGCCGAAGGAGGTTTTGCAATCGTTTTTTTGGTGCGGACTCATCAAGGCGTACGTTGTGCACTAAAAAGGATGTATGTCAACAATGAACATGATCTGCAAGTCTGCCAACTTGAGATACAGATTATGAGGGACCTAGTGGGCAACAAAAACATAGTTGGTTATCTGGACTCCAGCATAACTGCAGTTGGAGCTGACGATGTGTGGGAAGTCCTAATCTTAATGGACTTCTGTCGAGGTGGGCAGGTGGTTAATCTAATGAACCAGCGGCTACAGACAGGCTTCACTGAAGCCGAGGTGTTACAGATCTTTTGTGACACGTGCGAGGCGGTCGCTCGTCTCCACCAGTGCAAGACTCCAATCGTCCATCGAGATCTTAAGGTGGAAAATATTCTTCTGCATGACCGGGGACACTACGTGCTCTGTGATTTTGGAAGTGCCACCAACCACTTCCAAAACCCTGAGACAGAGGGGGTGGCAGTCGTGGAGGAGGAAATCAAAAAGTACACTACTCTGTCATACCGCGCTCCAGAGATGGTCAACCTCTATGGTGGAATGATAATCACAACAAAGGCAGACATTTGGGCCATGGGTTGTCTTCTCTATAAGCTGTGCTACTTCACGCTACCTTTTGGGGAGAGCCAAGTAGCGATCTGTGATGGAAGTTTCACAATCCCAGACAACTCCCGCTACTCCCAGGATATGCACTGTCTCATCAGATACATGCTCGAACCTGACCCAGATAAGAGACCAGACGTCTACCAAATATCCTACTTTGCCTTTAAACTGGCACGACGAGAGTGTCCGGTCCCAAATGTACATAATTCACCTATTCCTGCAAAACTTCCCGAGCCCATTAGAGCCAGTGAAGCAGTGGCCAAAAAGAGTCAAACCAAAGCCAGGCTCACAGACCCCGTTCCTACCATGGAAACCTCCATTGCACCTCGCCAACGACCCAAGGCTGGCCAGGCTCAGCCCCAGCCGATATCAGGCATTCTTCCCATCCAGCCAGCTCTCACCCCACGCAAGAGACCCACTGTGGCTGCTGGAGCACCCCAGGCCATAGGTGTTGGTATCAATGTCCCGCCACCAGCTTCAGCCGCTGTGCAAGCTGCTCAACAGGCTCCTGCTGCACAGGCTGCACCGCAGCCAGCTCCCACAGCCAACATGCAGCCACAGGCTACACCACAGCATCAGCAGCTTCTCatgaagcagcagcaagcctcaGCCTTTCTAAGCCCACAGAGTAACCAGCAGCACCAACTGATACAGAGCCTCCAGCAACAACAAACAGCGTCTCAGCCGTCTACCCTGCTGCAGTCCAAAGTTAAGCCTGTTCATCCAGTTAGTGCCCTGCAACTGCCACACCAGCAGCATGTAGCTCTTGTCCATGTCCATGAAACTGCAGCTTCTCTTCTGACCCCCATCCCTGAGTCTGCAGTCGTTGGTCCTGCAGCTGACCCAGAGACGGCTGACCGAGTGATTCACAAAGTCGGCTCAATGACACCCCCCTCGTCGCCAAAGATGGCCCCTAAAAGCGGCCACAGACGCATTTTGAGCGATGTCACTCACAGTGCCGTGTTCGGGGTCCCGGTCAGCAAATCCACCCAGCTACTGCAGGCAGCCGCAGCTGAGGCTGGCCTCAACAAGTCCAAATCAGCCAGCACGACTCCTTCTGGCTCCCCCTGCTCGTCCCAGCAGAGTGTTTATCATCCAGGTGATGCTAACGCCCAATCGGCCCTTACTGCACCCAGCGCTCAGCCCAGCTGGAACCCCTTTGGGGATGATAACTTCTCCAAGCTAACAGCAGAGGAGCTGCTTAACAAAGACTTTGCAAAGTTAGCGGAGACTGCCACACCAGGAGAGAAGGTCACAGGCTCCACTGAAAATCTCATTCCAGGGCTCAATGCGTTTCCAGCTGAAAGGTCGGCAGACATCATGAGTGCAGGTTCAGCGTTGTTGACTGTCCCGGACCCCTTTAAtaccctctccctctctgacaCCACAGTGAAGGCAGAGGTGTGTGTGGATTCACTGATTCCTGGTTTGGAAGCCCCCCAGGCCCAGCGACACTCGGGCCAGCCAGAGCTCCTCCCTGCCAGCATACCAGACTCTCTCACTGGGGAGGACTCTGTGCTGGGTTGCGACCTGTTATCTCATACTTCTCCTCATGGAAGCCAGTCTGTTTCTGCTCTCccgtcctgctcctcctcctgctcctctgctcctcctGGATCCGGCTCTGGATCCTGTCTGGAGGAGCTGCTGCCTGGTCAGACAGCTTCTGACTCTGCTTTTCTCATGCCGTGTGGGGAGAAGGGCAATGACGACGAGTTTGACCCTATTCCCGTGCTTATCTCCAAAAACTCAAATCAAGATGTTCAAGGGGAAAGCAATGGCTACTCAGTTCTTAGTGAGGGACAGGAGACTGAACCTGCAAAAAGAGAATCTCGCGCAAACGAGGGATGTGTGCACTCCAGcgatgatgaagaagaagaggaggaggaggaggatgaagccCACGAAGAAGAGCAGCAGGATGATGGAGCCGTTGAGAGTCAGGCAGCCGTCCAGGACTGCAGCGGCTCCAGACCTCTGCTGCTCGACTCGGAGGACGAAGAAGAACCTCGGTTATTCGTCCACTCGTCACCGCTCTCCAGCGCAGTCCCAACGCAACCGCCCGCTACCTTCCACCAACCAACTCCGAGCACCTTCGCTCCGAATCATTCCCAGCATGTACACGAGCCAGCAAAAGGGCCAGATGTCGGCGCAGACGTTTTCTCCAAAGCACCCTTTCGCGTTGCGCAAGAAGAAACTGCCGACGTGTTTGCCAGCGCTCCGTTTCCACGCGGCCCCCTTGCGGCTCCGCAGCACTTCGACGTATTCTCTCAGGCTCCGTtcggaaaaagaaaagaggctcCAGGAGCTCCGCAATCGTATCCTCATGGGTCTGGAGTTCATCACGCTGTGACCGCTGACCACGGCGTGTTGGGACAAGTTGTCCAGCAGCCGTTCCGCCCACAAGCTCTGGCCAAATATTCCAGACACTTTGAGGGACCTGCGCCGCACAAGCCAGTAGCAGCTCACCGGGTAGTGTCGAACGTGAGCAGGCAAGCCGCTGTGGCGTCGGTCCCCGTCGGACCTCTTCACTCATGGACCTCGGAAGTGAGCGCCGTAGACCCTTTCGTCTCTGCCCCCTTTCACCTCAAGGCCCCGCAAGAAAAGCCCTGAGCGCACGCTCGGGAGAGGTCAGCGCTCATAACTGAATTATGCAAACCATTACAGGCGTCCTGCATGCTGTTGCAAGCGCTGCAGCTGGACTGCAGGCCTGCATGGATCTCATTCTTAACTGGCTCCAATTAGTGGTAGTGCGAGGTCATCTTTACACTTGAATGCTCCATTAGAGTAAGAAAACTGACATAAATCCTTGACTCCtagtctcttcttttttttttataatatttccTGTCGCGTccttttacctttttttgaATCGTCCTTGGTCCTTTTGGTACGTACATCTACAACACAAAGACAATATGGTGGTCAAGCATTTGATTGTTTTCTTGCCTACCTCAGTTAATTTTCGTATCGGCGCTAAAACACCACGCAGTGACGTGATTCGTAGTAGGGGTGTCACAATTTTccgatttttaaatcaaaattgaGCTTTCAATTTCGACTATCGTAATCAAAAGCAGGGTCGGCGATTACCCCAGTATCTTTGTTTCTCTCCCCACCTGCACCTACTTGCGCACGTCCAAAGAAAAACAGCatagcttaccggctggtagcatgcagctaaagacacaaggTAACGTTAATTTAGCGGTAGCCTGCAGCTGCTCTTTTCCAGACCCCATGGCCACTGCCGGAGTCTGAGATAACGGAGGAACAACCGAACTGGAAACTCCTCCTGCTGCTTCCCTGAAGTCACCGTGTGGCAACATTTATTCCCCCCCGTGAGTGAGTTATGGAAATAGAATGAAGGTAAAGCACGTGGGCTCCGGCGGGACTTCATGGTGCGTTCATGTGGATCTCGGTAAACTAATGGTGTTTTCACTTGCACTTTGTTAATTTTGAGAAACTCGAGCTGTTgtaaagtacccttctgccatctagtggctcttCTTGTGGCGTTGCTGTCActgctgaaaagaaaatgtttaaatagaaaattgaatcgaatcgtgacacccctagttCGTAGAACGTCTGCAGCTTTGGCAGTTTCATTTCCTGTATATTTGAGCTTCACTGTGAAACTATGGTCTGATCACGCCTCATTCCTCCTCTTGTATTAGTTCTTATAATTCAACAAGATCATGACTTCACAGAAGCTCGGAAGAGGAAAAGACACTGTAAAGATGTTTCGGGGGAATGTATCTGTAATTACATCAACGTTACAATGATTCCCCTCAAAGGCCATAGTTTTGGGCTCTTTGGTCTTCGTGCCTGACAGTTTGTTACAAGGCAGATGCTGGATAATGATGCATTCAAGAATAACATTTGTTGATATGAAATGTAACTTTTGTTTCATtccaaaatgtttgcattttgtcatgttttatgtttgtggtcACTACTCTGTCTAATTTAAATGGAATATCGGTGTCTATTCCACGTAACGTCCAAACCGTCATTAAAATGTTATACAGAAAACTCATTATAGTTGTTCCTATGTTAGATACGTGTAGAAGACTCCCTTTTCTTGGTTTCTACTTCCTTTACAAGATGATATCTCTGAAGCCTTACACCCTTACAGTACATCCCTCCAACCACATCAAACAGCATAAATCACTTTTGCCTTTtgtgccctccttaaaaaaactgcCGCGTTTACATCGTTTTATTGCACTTCATTGCATTCAGCACCAAAATACTTGTGAACAATCATGTACAACTTCCTTTTGCTGTCTGCGGTCCACTAATGCACCGAGATTTTCATTCAACTCTGTAATACATCTCTATCGTAGGTCTCTATAAACTCCAAATGTGTACTCACTGTGACTCACACTGATGTGAAAACTTTGCTTCACAGTTCCAGTCAGGGATTGTATCGGTAGTGTCTTGTAAGTGAGAACTTGAATGGTGACTGATTGATGACATTCCTTTTTGAATTTATTTCCATCGTCATTTGggaatatttttttgtcttttgtgcttTGTAAAATCATGGAACACTCTTTGGTTCTCACCACGGCACCTTTTTAAGAAAAGGGGATCCAACCTGTTTCAGCCCAAAGTTTAATTCATGTATTCCTCTGTTGCAATGTAAAATCCTCTGCTTTCTTTTTGAAGtgtacaatcttttttttttatatatatatatataatttttttttttttttttctctcacccaAATTGTATACATGAAGGTTGCACATAGTCACTGACACAGAGTCAAGGGTTCCCTTAAGAAGAATGTGTTTTGAGTTTAACACcgctgtaaaatgtatttcaaaccGTTGTATAGGAAATCTTCGGAGGATTCAACAACATGATGATAATACTGTTGGACAAAAAAAGCACTCTAACTACTTGCTGCACAGCCTACCTTTAAAAACTGTTATAATAtgtaagtcataaaaaaaacatattaaatgAATGTAAATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90271 lncRNA upstream 4837 37383588 ~ 37383822 (+) True G67530
TU90263 lncRNA upstream 43583 37344462 ~ 37345076 (+) True G67522
TU90117 lncRNA upstream 78473 37307240 ~ 37310186 (+) True G67394
TU90093 lncRNA upstream 358528 37011838 ~ 37030131 (+) True G67373
TU90029 lncRNA upstream 778865 36606597 ~ 36609794 (+) True G67326
TU90307 lncRNA downstream 56256 37478139 ~ 37478868 (+) True G67563
TU90312 lncRNA downstream 80819 37502702 ~ 37504728 (+) True G67568
TU90315 lncRNA downstream 124029 37545912 ~ 37547224 (+) True G67570
TU90322 lncRNA downstream 153633 37575516 ~ 37576964 (+) True G67572
TU90396 lncRNA downstream 278631 37700514 ~ 37707458 (+) True G67628
XM_039803429.1 mRNA upstream 129349 37233747 ~ 37259310 (+) True rab11fip1a
XM_039803430.1 mRNA upstream 129349 37233747 ~ 37259310 (+) False rab11fip1a
XM_039804177.1 mRNA upstream 156844 37160244 ~ 37231815 (+) True adgra2
XM_039803981.1 mRNA upstream 237001 37111859 ~ 37151658 (+) True pdlim2
XM_039802301.1 mRNA downstream 573 37422456 ~ 37432110 (+) True med22
XM_039802303.1 mRNA downstream 573 37422456 ~ 37427977 (+) False med22
XM_039802302.1 mRNA downstream 580 37422463 ~ 37432110 (+) False med22
XM_039802300.1 mRNA downstream 15999 37437882 ~ 37444341 (+) True nfu1
XM_039802304.1 mRNA downstream 24334 37446217 ~ 37471801 (+) True LOC120560121
TU89972 other upstream 907366 36478252 ~ 36481293 (+) False LOC120560081
unassigned_transcript_269 other upstream 1212108 36176479 ~ 36176551 (+) True trnaf-gaa_4
unassigned_transcript_268 other upstream 1227188 36161398 ~ 36161471 (+) True trnai-aau_2
TU89790 other upstream 1365395 35871423 ~ 36023264 (+) False G67152
TU90405 other downstream 301378 37723261 ~ 37728658 (+) True LOC120560165
TU90566 other downstream 939589 38361472 ~ 38407523 (+) False nkx6.3
unassigned_transcript_271 other downstream 1009709 38431592 ~ 38431664 (+) True trnaf-gaa_6
TU90637 other downstream 1173928 38595811 ~ 38598473 (+) False G67824
TU90882 other downstream 1988355 39410238 ~ 39413981 (+) True G68023

Expression Profile