RNA id: XM_039802302.1


Basic Information

Item Value
RNA id XM_039802302.1
length 1219
RNA type mRNA
GC content 0.47
exon number 5
gene id med22
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 37422456 ~ 37432110 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGACACACCGGAAGTTAGCCGATATAGCattaggaagaagaagaagagctaaCGTACTCGGTCTCGTTATACACAGCGAGATTGTTTTCAAAGTATGCGGTAAAAAGAAGTAACGTTAAGGCGCGCGCTTCGCTGCACGATGGCTACCCAGAGAGGTCTCCCTCAGAGCAAAGAGTCCCTGCTCCAGAACTACAACAAGAGGCTGAAAGATGACATCAGGTCTATCCTGGACAACTTCACAGAAATTATCAAAACGGCAAAGATAGAAGATGAGACACAGGTTTCCAGAGCAACCCAGGCAGAGCAGGACCATTATGAGATGCACGTCAGAGCAGCCAACAttGTTCGAGCCGGCGAGTCCCTGATGAAGCTGGTGTCGGACCTGAAGCAGTTCCTGATCCTGAACGACTTTCCGTCGGTGAACGACGCCATCAGCCTCCAGAACCAGCAGCTGCGCTCGCTGCAGGACGAGTGCGACAAGAAGCTGACGTCGCTCCGGGACGAGATCGCCATCGACCTGTATGAGCTAGAGGAAGAATATTACTCCTCCAGCTACAGTCAGTGGGACAGCACTGATCTGCCGCTGTGCGAGGCGTACCGCCGGCGAGACAGCTGGGCCTCGccaggcagcagcagctgcagctccACGCAGGGCGACCGGGAGGACGCGGAGGGACCTCCGTCACAGGAGGCGAACCCCCAACACCACCTCAACGGACACGGGACGTCCTCCATAGAGAAGCcatgaggaggaaggaaggcTGATGAACACTTGTGCTCAATCTGTACTTCAGTGGTTTGGCTAATTTAGTTTCCATTACACATTGTGAACTAGCGTCTGCCACGGCAACTAAACCTTTTGATATTAAGGATTTCTCTTTGCATAAATAGGTATTAAAAGAAAAGAGTAGAATAAAGAAACTACTGAAGAAATACCTGGAAAAGTTAATAACAGGAAGGTTTAGAAGTAACATTCCTCtgtattaattcattttttcaaaatgaacTTATACATTTGCATACACGCTACacttttatactgtatatagacaatacttgagtaaaaaaatccacttttttttctgtgtaccTTTGCCGCATTTAGTTATCAGTatagcatttttgtttttgagtgTATGTGCTTACATTGATTTcatgtttaattttgttttttactccTCCAAGCACTTGTCACATTAAAGAACAACTTCaatcttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90271 lncRNA upstream 38641 37383588 ~ 37383822 (+) True G67530
TU90263 lncRNA upstream 77387 37344462 ~ 37345076 (+) True G67522
TU90117 lncRNA upstream 112277 37307240 ~ 37310186 (+) True G67394
TU90093 lncRNA upstream 392332 37011838 ~ 37030131 (+) True G67373
TU90029 lncRNA upstream 812669 36606597 ~ 36609794 (+) True G67326
TU90307 lncRNA downstream 46029 37478139 ~ 37478868 (+) True G67563
TU90312 lncRNA downstream 70592 37502702 ~ 37504728 (+) True G67568
TU90315 lncRNA downstream 113802 37545912 ~ 37547224 (+) True G67570
TU90322 lncRNA downstream 143406 37575516 ~ 37576964 (+) True G67572
TU90396 lncRNA downstream 268404 37700514 ~ 37707458 (+) True G67628
XM_039802918.1 mRNA upstream 580 37388659 ~ 37421883 (+) False LOC120560422
XM_039802300.1 mRNA downstream 5772 37437882 ~ 37444341 (+) True nfu1
XM_039802304.1 mRNA downstream 14107 37446217 ~ 37471801 (+) True LOC120560121
XM_039804242.1 mRNA downstream 121268 37553378 ~ 37575456 (+) False kansl3
XM_039804241.1 mRNA downstream 123122 37555232 ~ 37575456 (+) True kansl3
XM_039804244.1 mRNA downstream 123122 37555232 ~ 37575456 (+) False kansl3
TU89972 other upstream 941170 36478252 ~ 36481293 (+) False LOC120560081
unassigned_transcript_269 other upstream 1245912 36176479 ~ 36176551 (+) True trnaf-gaa_4
unassigned_transcript_268 other upstream 1260992 36161398 ~ 36161471 (+) True trnai-aau_2
TU89790 other upstream 1399199 35871423 ~ 36023264 (+) False G67152
TU90405 other downstream 291151 37723261 ~ 37728658 (+) True LOC120560165
TU90566 other downstream 929362 38361472 ~ 38407523 (+) False nkx6.3
unassigned_transcript_271 other downstream 999482 38431592 ~ 38431664 (+) True trnaf-gaa_6
TU90637 other downstream 1163701 38595811 ~ 38598473 (+) False G67824
TU90882 other downstream 1978128 39410238 ~ 39413981 (+) True G68023

Expression Profile