RNA id: XM_039804244.1


Basic Information

Item Value
RNA id XM_039804244.1
length 3113
RNA type mRNA
GC content 0.56
exon number 22
gene id kansl3
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 37553378 ~ 37575457 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGGAGGGATGTGGAGTCAAACATGGCAACAGATCACACAACAAAAGGAAGTGAGGCTTGTACGCACTGAATATTTGTGCTTTAAATAAACCTCTATAATTAACAGAAATACGTCCTTTTTTGATCTTATTTGTCTCAAAAGAAGAGTTTAAACCGTCTTGGAAAACATGGAATAATAGAGCGAAAAGTTTGGTCTGAATCCACCCGAGTTGTTGAGCTCTTCCCGGGGCCCTTTGGGGCCCAGGAAGAAGATGCATCGAGGTGGGGATAAAGACTTCCAGATATCGGCACGAAAGATGGGCACATCCTTGCTCTTCCAGCTGTCGGCTCATGAAAGAGAGCTGGATTTGGTGTTTCTGGACCACAGCTATGCCAAGCCATGGAATGCCCACCCAGACGCCAGCAGCGCCCGGCCCACCAGGACGCTGTTTGTTACCCCTCGTCGCCAGCCTGAAGCCTTGTCAGACTCTGATTCTTTGTTAGACGTAGAGACGGTCACAGCGACGCCTGCTCCTCTGTATGATAACCAGAAAGCTCTCAGTGTGATGAAGGAGTGTGAGCGACATGTTCTGTTTGCTCGCACAGTCGCTGAGAGCCCTCCACCCCCCGATGACTGGGAGGAACACGTAAACAAGACGGGATGGTCAGTGGCCCAGAACAAACTGTTCAATAAAGTCCTTAAAGCTCTACAAGCTGAAAGACTAGCCCGCCTGGCCAATGAAAATGCTTCCAATGAGCCGATCTTGCGGAGGATAGCCGTGGACAATTGTGCCAGGAAGGTGCGGCATGCATTAGCCAGTGTGAACTGGGACACCAAACTGACGCAGTGGTTACACACTACCATGATTGAATCCTTAAGCCTCGCTATGCTTGCTGCCTACCTGGATGTTCTGCAGACTCTCAAAAGCAAGTTGCCGTTGCTGATTGACAGAATGTTGCTGACAACGGCAAAGACTGGCGCTCCAAGCGCAGAGGCCCTGTCGCTGCTGTTAAAACGGCCCTGGGACCCAGCTGTTGGagtcctgtctcaaaacaaacCGAGCAAGCTTCCTGGAGCCCCGCTCATCCTAATCGCACCGTCAAGCCCAACCAATCCTGCCCTCTCTACCTCGCGGCGAATGAGATTCTGGCAGTCACAGCTCTCTTGTTTGGGAAAGGTTATTCCTGTGCACAGTCACGTGAACAGCGGCGCAAACATCGGCATCACACAGTGCTTAGAGCACATGTTGGGCACGGTCAGAGCCAAGGTTCACAGTCACTTCCCCCACAAACCCATCATCCTGGTCGGCTGGAACACTGGAGCTCTCATCGCTTGTCACGTATCCCTTATGGAGTATCTGACCGCTGTGGTGTGTCTCGGCTTCCCCCTGCTAACAGTCAACGGGCCAAGAGGGGATGTGGACGACCCGCTGCTGGACATGAAGACTCCGGTGTTGTTTGTGGTTGGCCAGAACGCTATGCATTGTAGCATAGAAGGCATGGAGGAGTTCAGAGAGAAGCTGAGGGCAGACAACAGCATGGTGGTGGTGGGAGGATCAGATGACAACCTCAGAATCAATTCCACAAAGATGAAATCAGACGGACTGACGCAGACCATGGTGGACCGCTGCATTCAGGATGAGATAGCGGACTTCTTGTCAGGCGTCCTCGCACGGGCAGAGGGCCACAGCCATGGCTCGGGGGAGACGAGGGACCTGGACacggagaagaagaaaaggccTCGGCGGGAGCTTCCCTTCGACATGGAGAGAGGACGGCCTTCCTCCCCCGCGCTCAGAGTTCCCATCTCACCATCAGGTTCAGAGGATCTGTCTAGCGTCTGTAGCAGTCCCACTTCAAGTCCCAAACCCAAGACGTCTGGTCTGTCTCCAGCGCAGAAGTCCAGTCTGATCACAGCCACGCAGCTCCTAAAGACCCACATGCAGCGCTCTGGCACAGTACTCACTCACAAGCAGGCTCAAGCTCAGTTTGCTGCTTTTATGAAACAAAACATGCTTGTGAGGAAAAATCTTCCTCCTGGCAGCCCTCCTTGCATTTTTGTGCCAGTAACCAGTGATCAGATGGAGGGCCTGGACCGAGATGAACTGCGGCCCCATGGCAAGAGGAGGCAGGCGCCTAACCCCACACCAAGCAAAGCCTCCAAGAGAGCCAAGATCAAGGTCACCATTGTTTCCCAGAGCGAGTCAGCAGGGGGCACCATGAGCTCCGCTGCACAGCAAGTGGGTGTCTCTGGGAAGCCCTTAACTGTGACAgtgggacagactgtggctggAGCCAAGGAGCTCTCTGGACTTCTCACAGGCCAGCGGTCTGGTAGTCTCTCAGAGGTATCTGGTGCCCTGTCCCCAGGCTCCAGCTCATTCAACAGCGTGCAGCCTTGCATGGTATCAGGGTCGTCCACACCAGTCCTGGCGCAAGCTCCGGCTACTGCCCAAGcgCCTTCCGCCAGCAGTCTGCTACAAGGCCTAAGTTTCAGTCTTCAGGAGATCGTCACCAAAGCTCCTAGCTTGCCCTCCACAGCAGTCAGCACAGGCAGCACCCAGGCGGTCTGTGGCAAGCCCCAGGGTCAGGTCCTGAGCTCCGTCGCCACCAGCAGCAGTACTCTGCTCCGGGCGATGCCTGTGGTCGCCACAGGAGGAGTGGCTAAAACCACCGCCATCCACCAGCTGCTCACTAACGGCGGGCTGGCCAAACTTGCCAGCAGCCTGCCCGGCTTGGCGCACATCACCAATCAGACCGCTGtaGGGCAGAAAGCCCCCACTTCGATAACGGTGACGCTGCGAGGAGCACAGCCGAGTAGAGCGGGATCTCTCAGCCCAGCTGGCGAGGTTGTGGCGCCGGCTCGCCCCCTCGAGCCTAAGCGGTGAAAGCTTTCCATGTGGCGATGCACCTGAAGTAAAGCTGGTGCTGTGCCAGGGGCATCTGGGAGCCACAGCCTGCCGATGTGACGGTACcccacccccccgccccctcaCCCCACCCCACAACATGCAGAACACCTGCCACACGTCCTCCAGAGAGTTCCCCTATCCAGATGGTTTGGAAAAGGCCGGGCCCGCTGTGGATGTGCTGCTGCATTGTCCCAACCTTTATGTGCAGATGTTTGTCTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90315 lncRNA upstream 8008 37545912 ~ 37547224 (+) True G67570
TU90312 lncRNA upstream 50504 37502702 ~ 37504728 (+) True G67568
TU90307 lncRNA upstream 76364 37478139 ~ 37478868 (+) True G67563
TU90271 lncRNA upstream 171410 37383588 ~ 37383822 (+) True G67530
TU90263 lncRNA upstream 210156 37344462 ~ 37345076 (+) True G67522
TU90322 lncRNA downstream 60 37575516 ~ 37576964 (+) True G67572
TU90396 lncRNA downstream 125058 37700514 ~ 37707458 (+) True G67628
TU90417 lncRNA downstream 193034 37768490 ~ 37781260 (+) True G67639
TU90421 lncRNA downstream 208218 37783674 ~ 37807644 (+) True G67643
TU90440 lncRNA downstream 247615 37823071 ~ 37823369 (+) True G67661
XM_039802304.1 mRNA upstream 83431 37446217 ~ 37471801 (+) True LOC120560121
XM_039802300.1 mRNA upstream 110891 37437882 ~ 37444341 (+) True nfu1
XM_039802301.1 mRNA upstream 123122 37422456 ~ 37432110 (+) True med22
XM_039804255.1 mRNA downstream 10394 37585850 ~ 37651905 (+) True bmp1a
XM_039802386.1 mRNA downstream 132755 37708211 ~ 37717629 (+) True LOC120560164
XM_039802388.1 mRNA downstream 142447 37717903 ~ 37728705 (+) False LOC120560165
XM_039804207.1 mRNA downstream 154370 37729826 ~ 37762215 (+) True acsl2
XM_039804208.1 mRNA downstream 168744 37744200 ~ 37762215 (+) False acsl2
TU89972 other upstream 1073939 36478252 ~ 36481293 (+) False LOC120560081
unassigned_transcript_269 other upstream 1378681 36176479 ~ 36176551 (+) True trnaf-gaa_4
unassigned_transcript_268 other upstream 1393761 36161398 ~ 36161471 (+) True trnai-aau_2
TU89790 other upstream 1531968 35871423 ~ 36023264 (+) False G67152
TU90405 other downstream 147805 37723261 ~ 37728658 (+) True LOC120560165
TU90566 other downstream 786016 38361472 ~ 38407523 (+) False nkx6.3
unassigned_transcript_271 other downstream 856136 38431592 ~ 38431664 (+) True trnaf-gaa_6
TU90637 other downstream 1020355 38595811 ~ 38598473 (+) False G67824
TU90882 other downstream 1834782 39410238 ~ 39413981 (+) True G68023

Expression Profile