RNA id: TU90421


Basic Information

Item Value
RNA id TU90421
length 235
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G67643
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 37783674 ~ 37807644 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGTGCTTTTCTTCATGTCCTTGTGAAGCTTTTTCGTCTGATCCTCCAGCTTTTGAAGCTTGTCATATTCTCGCTCAAAGTCTCTTTCAacGGTTTTAGAGACAATCTGCTTCTTTGGTTGTCCAATCTTGAAAGGAATCCAGCTCATTTTGAGTGAACTTTTATTCCGGTTTCATTGGGTGGTTTTGTTATTTTCCGAGGACTTCATTCCTTTCCACCAGTCAACAGTCGAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90417 lncRNA upstream 2414 37768490 ~ 37781260 (+) True G67639
TU90396 lncRNA upstream 76216 37700514 ~ 37707458 (+) True G67628
TU90322 lncRNA upstream 206710 37575516 ~ 37576964 (+) True G67572
TU90315 lncRNA upstream 236450 37545912 ~ 37547224 (+) True G67570
TU90312 lncRNA upstream 278946 37502702 ~ 37504728 (+) True G67568
TU90440 lncRNA downstream 15427 37823071 ~ 37823369 (+) True G67661
TU90445 lncRNA downstream 105989 37913633 ~ 37914035 (+) True G67666
TU90449 lncRNA downstream 114080 37921724 ~ 37936859 (+) True G67669
TU90471 lncRNA downstream 181602 37989246 ~ 37989537 (+) True G67686
TU90482 lncRNA downstream 206948 38014592 ~ 38014799 (+) True G67697
XM_039804207.1 mRNA upstream 21459 37729826 ~ 37762215 (+) True acsl2
XM_039804208.1 mRNA upstream 21459 37744200 ~ 37762215 (+) False acsl2
XM_039802388.1 mRNA upstream 54969 37717903 ~ 37728705 (+) False LOC120560165
XM_039802386.1 mRNA upstream 66045 37708211 ~ 37717629 (+) True LOC120560164
XM_039804255.1 mRNA upstream 131769 37585850 ~ 37651905 (+) True bmp1a
XM_039804560.1 mRNA downstream 133275 37940919 ~ 37950699 (+) False ido1
XM_039804559.1 mRNA downstream 133276 37940920 ~ 37950699 (+) True ido1
XM_039802148.1 mRNA downstream 207731 38015375 ~ 38027047 (+) True stc1
XM_039802149.1 mRNA downstream 207731 38015375 ~ 38027047 (+) False stc1
XM_039804515.1 mRNA downstream 242695 38050339 ~ 38053972 (+) True nkx2.7
TU90405 other upstream 55016 37723261 ~ 37728658 (+) True LOC120560165
TU89972 other upstream 1302381 36478252 ~ 36481293 (+) False LOC120560081
unassigned_transcript_269 other upstream 1607123 36176479 ~ 36176551 (+) True trnaf-gaa_4
unassigned_transcript_268 other upstream 1622203 36161398 ~ 36161471 (+) True trnai-aau_2
TU89793 other upstream 1764421 35871423 ~ 36019253 (+) True G67152
TU90566 other downstream 553828 38361472 ~ 38407523 (+) False nkx6.3
unassigned_transcript_271 other downstream 623948 38431592 ~ 38431664 (+) True trnaf-gaa_6
TU90637 other downstream 788167 38595811 ~ 38598473 (+) False G67824
TU90882 other downstream 1602594 39410238 ~ 39413981 (+) True G68023
TU90883 other downstream 1602594 39410238 ~ 39413981 (+) False G68023

Expression Profile