RNA id: XM_039802148.1


Basic Information

Item Value
RNA id XM_039802148.1
length 4065
RNA type mRNA
GC content 0.45
exon number 4
gene id stc1
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 38015375 ~ 38027047 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAAGGAGTCCAGTGTAAAGACATTTGCTGGCAACTGACTTGTAACAGCCTACTGTGCGTTTCTTGTGTTTCTCGGCGCTGCAGAAGCTTGTCATTCTTTATGAATTACACCCAAAGCACGAGGCGTCTCTTTACATTTAGTTGTATTAGCTGTGTTGAGAGGACGATGCCTTTGAGGACCGGACTTTTTCTCCTGATGGTGCTGAACGCATCTGCAAATGAACTGGATCAAAACGAGTCTTATTCGCCCAGGAGAACACGCTTTTCTACCAACAGCCCTTCAGATGTGGCACGCTGTCTCAACAGTGCCCTCCAAGTTGGCTGCGGAGCCTTCGCCTGCCTGGAAAACTCAACTTGTGACACAGATGGCATGCATGACATCTGCAAATCCTTCCTTTACAGTGCTGCTAAATTTGACACTCAGggtaaagcatttgtgaaggAGAGCCTTAAGTGCATTGCCAATGGCATCACCACGAAGGCATTCCCCACCATTCGCCGCTGTTCCACCTTCCAAAGAATGATATCTGAAGTCCAAGAGGAGTGTTACAGCAAGCTGGATATCTGCACTGTTGCCCGATCGAATCCAGATGCTATTGGCGAAGTGGCACAGCTACCGAGTCACTTCCCCAATAGGTTTTATGGTAAGCTGCTACAGAGCCTGATGGACTGCGATGAGGACACAGTGGACCGCGTCAGGACCAGCATGGTGTCGCGGCTCGGCCCAGAGATGACCATGCTTATTCAGCTGCTGCAGAACAAGCCCTGCCCGTCCACTGCTGTGGCTGCAGCTGCCGCCATCCCGACTGGAGTGGAGGGCCGTGGGAGCTGGCGCTGGTCCATGGGTCCCCATATGTACAAGATCCAGCCTAATCTGCGAAACAGAGACTCTGCCAGCCATTTTGGCAAAAAGCGCTCTGCCAGTGACAGCTCCTAACTTCCACACAGATTCAGAAACTCCACAAAAAACCATCATGAAAGCTCCTCTGTTCCCTAGGGGTGGTAAAACTCCGCTAGActggaagtcacagaaacatgCACCTCTAGGGAATGCGGTGAGAGTAGATATCAGAGTTTGATTGTTGTTATGTTGTATATCCTACACTTTAGGCTTGAGAGAACCCCCCTTCCATCGAGTCCACTCACAGTTAGTGTCGAACATGTGGCTGTTGCATCTGTGCGACGAGGCGTTCCTGTTCACTCTTCTTCACCTCCTCCAACAGAGATGAAGCCTTGAGAAGTCGTTTGAAGCCAAGCATAAaacggaaagaaaaaaaaaacagccatacTGGTTAACGCCTCGAGAGCACAAGTCTGTacttttaaaaagacaaaaacacaatctCATAACCCCAACATTTGTTCATGAATAGAAACCAGTAGTCGGATTATTACTAGTTCACCGATAGGAATGGGAAATTATTGGTAGATGTAGTTAACATTTCAGCGATGAGACCTGTCAAATTGTGAGCATGAGATGTGGAAATGAGTTTCATATCTATTTCCTGACTAACATAACAGTTAAATTTACTGTACACTAAGTTATCTGAGACAGCCATAGCTCGCCCTCTAAAAGAGGTCCAAGGGGTTTCGTGATAACCTTTGAGAGGTTACCTTAAACTGACCAAAAAAACTTCAAACTGCCCTGAATGCTATTCATGAAATACCCAAATAGTGTATAGCTATAGAGCACTtattaggggtgtcacgattttcattttaaaatagagATTAGAGAGTTTTAGATTTCCACTATCGAAATCAGAAGCAGGAGCAGCGATTTCACCAGTAATTTGACTTGCGCAAGTgcgaataaaaaacaaaacagacacagtgtagcttaccggctggtagcttgcagctaaagacacagggcaacgttagcttaccggtagcctgcagctgctattttccagacaccatggccactgccggagataacagagaaaaaaaatcagaacCTGCTGTCCTGAAGTCACCGTGTGGAAACATTTTGTCTTCCCTGTGAGTGAGTTAGGGAAACAAACAACGAATGTAAAGCATGTGGGCTCCGACGGGACTTCCAACACAATCTCACTCCCAGCACGTCCAAAACTGTAGCTTAGTCAGGGGCCTTTGTCGTTTGTTACTGGAGCAAAAAGTCGACTTTAGTGTCTCAGTCAGACGCAGGGGGCTTTCAACTAATCAACTAActcaaaaaaaatgaaacccaACCCATCCGCGGCGATATTCAACGCTCTGGGTACCCATTTGGTGTCATTGTTCAGCATGCATGGTAAAAACACTTAGATACGGTTAGGGAAAGATCGTGGGTCAGATTACAAAATGCACGTTTaagtgacacgtgggacaagaacaggacacgaatcccggtctcctgggtgaaagtcctgtgttgtttgacacatccaccaccccaacttGCCTTCTTACGCTTTCAGTCCTTAATACCACTCCCTACCAATGTTGCTCTTGTCGTCATCTTACGGCGCgacggtcgagctgctgctctgcccggtgcgtcccgtacagacgctaaagggtgccttgtgcgtcggtatctgacgctgagaacCACTGACCAGGCATCATGGTTTGACGCTTGGTAAACTAAAAGGTGCTTTCAATTGCACTAATTTTGgaaaaactcaaactgttgttgtaaagtacccttctgccatctagtggttcaCGTATAGTCCTCTTTAAACGAACCAAACTCGGTCTAAAGTGGTTAAAAAAGTCGACCAACAGAAAAGAGACTCAGTCCTTTTTGCGTTCACATTGTCAGCTTACTTGAAAGAGGAGTCACTTCTCTTTCCGATGGGGCCTCAGGGCTAAAATACATACAGgacaaaaggcaaaacaaaCCTGAAACGTGTCGTGTTCACAATGCACAGGTCAAGAAAAACGCAATGCGGACTTGAAGCGAACCGTACTCAGACCACCTCCAGAAGAGGTCTGAGTACGGTTTGTTCCAGAGGGGTCTCAGTCCCTTTGGAGTGTTCACATATGTACATATCGATGAAAAACTAACCATTGGTTCCAAAAGGGGTCCAAGTCCCTTTGGAGTGTTAACATATACGCAAACAAAATGCTGACTAATGTCTTGAGTTCCTTTGAAGGGCTGAAACGGAccaagtgtaaaaaaaattgtggctTTTCCttcaatgttttaaattgaaaatcgaATTCAATCGTGACCTTAAAACGGAAAGTAAAATGGAATcatggatttggagaatcgtgacacccctaacTAGCACTTctacttgtttgttttctgatgGCAGATGTAGCCATGGTCGTGTGCTTTTAAACCATCATCCTGCACATAAGGATTGTCCAGGTCATGGCCAAGTCTAAaccatcagaaaaaaaaaaagtcaattttgcATATCTTGTATCCAGACACTTGTAATGCATACGACTGTTGAAGCTCTACGGTTTATGTGGGACCATGTTTAGTGGAATCTGTATCCTGTATCCGTTCTTATTAACTGAGCGTGAAGCAGTAGTGTATGTGCAGTAGCTGATTAGCACGTTCACCGGTGAGACTGAGAGGCAGCCATCTTCTTGGACTGATGATCGTCTTTCTCTGCGGTGAATAACGTGACATacacactggcttccagtgtcGAGATTGAGagtgactatttaaaaaaaaaaaaaatatgcctTGTTGTAATGATATTTATTTTCCTACAatattatttaatgttttttttttattttaaaattgcaTTATTGTAGTTTTAATTAGTTGATAGATTTTAAAAAGCAGTTCAGTCAGGGCTCCTATTTGAACCTATATGAGCTCtacgccaaaaaaaaaaaaaaaaaaaaaaaaaaagaagtgagcCGGCACTCTGGTGACTGAATGGGACCCGTGTCATGACTCTGTGCTGGCCATAGGGGAACAATGTTGGTCATTCACGCCCGGGGGATGTACTTTATGGGTGTTACAAGGGACCACAACAAAAACGATAGCTTCATTTTGACACACTTTCTGGTTGAAATAAAGGTTGTCATTGCAGCTGCTAGATGCGCTTGTTCAGTgctagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90482 lncRNA upstream 576 38014592 ~ 38014799 (+) True G67697
TU90471 lncRNA upstream 25838 37989246 ~ 37989537 (+) True G67686
TU90449 lncRNA upstream 78516 37921724 ~ 37936859 (+) True G67669
TU90445 lncRNA upstream 101340 37913633 ~ 37914035 (+) True G67666
TU90440 lncRNA upstream 192006 37823071 ~ 37823369 (+) True G67661
TU90497 lncRNA downstream 85993 38113040 ~ 38144615 (+) False G67712
TU90498 lncRNA downstream 85993 38113040 ~ 38144615 (+) True G67712
TU90499 lncRNA downstream 87864 38114911 ~ 38146223 (+) True G67713
TU90507 lncRNA downstream 149825 38176872 ~ 38180835 (+) True G67718
TU90512 lncRNA downstream 158843 38185890 ~ 38186960 (+) True G67723
XM_039804560.1 mRNA upstream 64676 37940919 ~ 37950699 (+) False ido1
XM_039804559.1 mRNA upstream 64676 37940920 ~ 37950699 (+) True ido1
XM_039804207.1 mRNA upstream 253160 37729826 ~ 37762215 (+) True acsl2
XM_039804208.1 mRNA upstream 253160 37744200 ~ 37762215 (+) False acsl2
XM_039802388.1 mRNA upstream 286670 37717903 ~ 37728705 (+) False LOC120560165
XM_039804515.1 mRNA downstream 23292 38050339 ~ 38053972 (+) True nkx2.7
XM_039802305.1 mRNA downstream 48019 38075066 ~ 38077900 (+) True nkx3-1
XM_039803807.1 mRNA downstream 220980 38248027 ~ 38258116 (+) True c6h9orf85
XM_039803432.1 mRNA downstream 236320 38263367 ~ 38303966 (+) True gda
XM_039804048.1 mRNA downstream 282556 38309603 ~ 38323496 (+) True si:ch211-214j8.12
TU90405 other upstream 286717 37723261 ~ 37728658 (+) True LOC120560165
TU89972 other upstream 1534082 36478252 ~ 36481293 (+) False LOC120560081
unassigned_transcript_269 other upstream 1838824 36176479 ~ 36176551 (+) True trnaf-gaa_4
unassigned_transcript_268 other upstream 1853904 36161398 ~ 36161471 (+) True trnai-aau_2
TU89793 other upstream 1996122 35871423 ~ 36019253 (+) True G67152
TU90566 other downstream 334425 38361472 ~ 38407523 (+) False nkx6.3
unassigned_transcript_271 other downstream 404545 38431592 ~ 38431664 (+) True trnaf-gaa_6
TU90637 other downstream 568764 38595811 ~ 38598473 (+) False G67824
TU90882 other downstream 1383191 39410238 ~ 39413981 (+) True G68023
TU90883 other downstream 1383191 39410238 ~ 39413981 (+) False G68023

Expression Profile