RNA id: TU90884


Basic Information

Item Value
RNA id TU90884
length 2819
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G68023
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 39410222 ~ 39461478 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACAATCTGAAATGTTTTCCAGACAAAATTTATTTTGATACTTCGATACAATATGAAGACCTAAATGGCACAAGACAGGAAATCTCCGAACGAAAAGGCACAAAATATCATACATTCACTATCATGTCCCCTGAATTTCAAAAGCTgatcagaaacatttaaaagcgaGCAGTTCAGAAGTTAAACAGCTGTCGATTTCATAAATTAGGAGAATACTGTACAGTTTGCAGTTTGAGAGTACTTGCTCTCCCCCCGTATCGTTGTTGACGGATTGGTTTAAGCATTGATTGAGTTTGCTTCTCTCTTCAAACAGACAGCAGGAATCATTAAGATAGACTTGGAAACATTGATTACACTGAAGACCGATTGCTCTTTGAGACGTATGCAAACAAACAGAGACCAACTGCCTCATATactgggacaaaaaaataaatcaggctACCGCTTCTCATCACGGAGACTTTGAATTTTCCCCACAGAAAAGGATCTGGTTTGGTGAAAGGAAGTCAATAGTTTGGGGCAACAatatatgaaaagaaaaaagatgctCGTGTCGTATTGTTCACCTGAGAAGATTTTGTTGTTGCCTCAGAGAATTGCTTCCCACTTTTCCTATGTTACCAGCCTACACTTGTTGGGACTCATGTAAACATATCAGAAATCCATAGACACTCTTTGGACAAGCCGATAACCCATCACTGAGGAAGCGATCACATTCCCTCGTACAGTttacacacaataaaaacatcAGGAATCGTCGAACCCAGATCGTTCATTACATCGGTGTCTTGAAAGGAAACGATATGGAAAACAAACCAAACCCCAAATTCCTGTTGCACAATTTAAGACACTGACgcatagggatgcaccgaatccaggattcggctttggccgaatattgggctttttgtcgaggttctggtttctgctgaatcttagaattttttcccagggaaccgaaccctacgcttgcactaggTGCGCTACGCTGGTTGCCGTAGTGACGGCGCcattgattacgggaaggtgttgaCGTAGGTGGAgtgttcaatgcagtaggctgtgagaaagtggacatggatctggtgagcagaaaaagttgttgtttggcagtactttcagtcaaaagaaggccattcaagtccagctacatgttcaatctggtcaatgctgattggtctggtggtggcgaggaccctaaactatacacaacatggccgctgttacaacatttggtatgaaacatccgaaagaatacgagttgtgcacgaaggaatctccagacagcagccagaatgcagcaacttcaggtacagcaaaggaaggacagtccctgtttacttcattcatgtgtttactgggttcatggactgaggatgggaggacgAGTCAGTAttatcttaaccagtggattcggtattcggccgaaccccaaaaatccgGATACAGTGCATCCCTACTGAcgcatgacaaaaacaaaaagaacaagGATCAAATGAGGGAACCACTTGTactatataaaatatgtatttaacaCTTGTGATGATCATGATTCTGAGGCCTAAAGGGGAGAAAGTGCACTCAATAATATGGCATCTCCATCCAAACGGCTGATCTGAGTAAGGCTGCAAagattgattagttgtcaacttaaattaatcgccgactattttgataatagattaatcggtttgagtcatccGAAAGTAAAAAAATTCtcttgattccagcttcttatatgtgaatattttttagttTCTTAAATCCCATATGACCGTAAACTGACTATCTTGTGTGTGAGTTGTTGGACAAGATATATTGGGGTGTCATCTTGGGCTTGGGAAAACactgattgacatttttttaaccatttaaaaaaaggccaAACGGCTAATCGATCGGGAAAATAATTGACGATTCATCAACTATTCATGaatggttagttgcagccccagATCTGAGGCGAAGATGTAAACCTGCAGCACCAACAGCGGTGTAGTGTACAGGCCGGCCCCGCTGCTACTTACGTTTGCTTGATGAAGGAGTTTCACACATCGACACTTGTCAGGAAACAAAAGGTGGTCACACgtaagaagaaaataaagggGTAATCACAAACGGCTTTGCCTGTAAAGCTCCGCCTGCCATGATTTGGTCCTAACAAGTAGCAGGCCGATAGGCTTGTGCTCACGTTTAGGTGTCAGGAAAACTGCCAGTCAGAAACAAGGGAGGTAGCTAGAGCAATAGCTGGCAGCAGAGGTACGATAGGtattataatgataataataataacaacaacaatataatAGGTCCGGAGATTAAGGCAAGCAGCGTGTGGTGCTGGTGTAGACTTGTTGTTACGAATCTGTAAACACACCTAGAATAAAGAGAGAGGCCTTTTGGAAACCGTTTACCTCCGAGAACCGGAGGAGTGAGACAGGCCTCTGGGGTGAGCTGGGGTGAGCGCTGCGCTGCAGTTTAGCTTGTGACGGAGGCTGGAGGGGTGTAGCACCATCTGTGGCTGTTTTTCAGTGcagtttttctttcctctggGGACATCTGCTAGGGAGGTGAATGCTGCGTTGTAGATTATGTGTCAATGTCTTCAGAATagggagagtgtgtgagtgagtgagtgagtgagtgtgtgagaacaaaaaaagaaaaccagtgGGAGCTGTAAACACTTCCAAAGTAACATCTCTTAGCTGAACAAGCTTGCACAGATCTGCCCAGCTTGAGCTTTTAAGAGATCAGTCACCACAAAGGCAtccacacctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90875 lncRNA upstream 51351 39358662 ~ 39358871 (+) True G68017
TU90846 lncRNA upstream 280935 39128582 ~ 39129287 (+) True G67991
TU90843 lncRNA upstream 387085 39021683 ~ 39023137 (+) True G67989
TU90839 lncRNA upstream 469550 38940395 ~ 38940672 (+) True G67985
TU90838 lncRNA upstream 482285 38927661 ~ 38927937 (+) True G67984
TU90902 lncRNA downstream 8966 39470444 ~ 39471015 (+) True G68038
TU90903 lncRNA downstream 8966 39470444 ~ 39471015 (+) False G68038
TU90934 lncRNA downstream 111344 39572822 ~ 39573769 (+) True G68064
XR_005639480.1 lncRNA downstream 134675 39596153 ~ 39602921 (+) True LOC120560408
TU90941 lncRNA downstream 136315 39597793 ~ 39598254 (+) True G68069
XM_039804598.1 mRNA upstream 572647 38832087 ~ 38837575 (+) True LOC120561457
XM_039802713.1 mRNA upstream 582437 38816729 ~ 38827785 (+) True tgoln2
XM_039802712.1 mRNA upstream 582820 38816729 ~ 38827402 (+) False tgoln2
XM_039802709.1 mRNA upstream 608506 38712285 ~ 38801716 (+) True tcf7l1b
XM_039802871.1 mRNA downstream 381668 39843146 ~ 39855737 (+) True LOC120560406
XM_039802099.1 mRNA downstream 400985 39862463 ~ 39877495 (+) True LOC120560010
XM_039804519.1 mRNA downstream 672288 40133766 ~ 40164425 (+) True vps33a
XM_039804552.1 mRNA downstream 732190 40193668 ~ 40205536 (+) True adra1aa
XM_039802032.1 mRNA downstream 917917 40379395 ~ 40398123 (+) True tmem230b
TU90637 other upstream 811749 38595811 ~ 38598473 (+) False G67824
unassigned_transcript_271 other upstream 978558 38431592 ~ 38431664 (+) True trnaf-gaa_6
TU90566 other upstream 1002699 38361472 ~ 38407523 (+) False nkx6.3
TU90405 other upstream 1681564 37723261 ~ 37728658 (+) True LOC120560165
TU89972 other upstream 2928929 36478252 ~ 36481293 (+) False LOC120560081
TU91051 other downstream 672314 40133792 ~ 40142482 (+) False vps33a
TU91053 other downstream 683281 40144759 ~ 40150677 (+) False vps33a
TU91064 other downstream 771995 40233473 ~ 40234591 (+) True G68173
TU91093 other downstream 917939 40379417 ~ 40382450 (+) False tmem230b
TU91208 other downstream 1405769 40867247 ~ 40897108 (+) True G68285

Expression Profile