trpm6


Basic Information

Item Value
gene id trpm6
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 40891729 ~ 40949978 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU91230
CCTCGGGACTCTAGCTGAACCTGGGCCTCGAGGACCGTAAGAAGCTCCACGAGTTCGAGGAGAAATGTGTGCAGGCCTACATCAACGAGAAGAGTGAAGGTGTCCACAGCAGCCAGATCAACAGGATCAGGAACACAGCCGAGAGgtttttgttggtcaatggagcgatcacttcccgctgcctcaagatagcaatactcccagaatgcacctgaacacacctccctgtaagaccagcacacccagaatgcacctgaacacacctccctgtaagaccagcacacccagaatgcaccagaacacacctccctgtaagaccagcatgcccagaatgcacctgaacacacctccctgtaagactagcacgcccagaatgcacctgaacacacctccctgtaagaccagcacgcccagaatgcacctgaacacacctccctgtaagaccagcaggtccatgggccacagatgtaAAAGCTGATTAATATAAAGGAATGGCATGAGTTGAATCGATGTTgaca
>TU91231
aggtttttgttggtcaatggagcgatcacttcccgctgcctcaagatagcaatactcccagaatgcacctgaacacacctccctgtaagaccagcacacccagaatgcacctgaacacacctccctgtaagaccagcacacccagaatgcaccagaacacacctccctgtaagaccagcatgcccagaatgcacctgaacacacctccctgtaagactagcacgcccagaatgcacctgaacacacctccctgtaagaccagcacgcccagaatgcacctgaacacacctccctgtaagaccagcaggtccatgggccacagatgtaAAAGCTGATTAATATAAAGGAATGGCATGAGTTGAATCGATGTTgaca
>XM_039802428.1
gtgtgtgtgtgtgtgtgtgtgttttcctacCAGCTTTTCTCTCAGACTCGGTGAAGCCATTGTTAGATTTCTCTGGGAACCGTTTGTCCCACAGcgaccgaccgaccgaccgGACAGACCCTGAACCCTGACCCTGAACCCTGAACCTGAACCCTGAGAGACCGGCTGAAGCGTGAAGGACCCACATCTCGCCGCCACACCGCAAGTTTCAGGTTTCAATGACGAGGAGAGAAACCCCGGGACCTCGTGTTGTATCTCTGACTGCCCCGGCGCTGCCATGAGTTTCAGCGAGAAGTCACGAAAGTCCTGGATTGAGGAAACCTTCTtcaggagagagtgtgtgaagTTCATTCCTTCGTCTCGGGACCTCCACAGATGTATTCCAGTCTGTCAAGTATGCCAGAACCTCATCAGATGTTGCTGTGGACGGCTGATGGGGGAGCACTCTTGGCAACACTCCCTACCCCCCATTTCCCTACATCCTGGTCCCGGAGCGGAGCTGGAGGACGACTGGTCCGTGGAGCGTCACACCAAAGCCAGCCCCACCGACGCCTACGGGACCGTCGACTTTCAGGACACCGCCACACGAGTCTGCCGCGCCAAGTATGTCCGTTTGGCGGTGGACTCAAAGCCTGAGGCGCTGCTGCAGCTGATGCTGAGGGAGTGGCAGATGGAGAGACCCAAGCTGCTGCTGACCGTTCAGGGTGGCGCAGAAAACTTCACCCTGCCGCCGAAAGTCAAGCAGGCCTTCAGCAAAGGGTTGGTCACCGCAGCCCTCAGCACCGGGGCCTGGATCCTCACCGATGGCATCAACACAGGTGTGTCGAAGTACGTGGGCGAGGCGGTGAAAACATTCGGGGGCCACAATCTGCGGAAGAGAAACACAGTCGGCATCACGCCCTGGGGGGTCATCGACAACAACACGGACCTCATCGGCAGAGACGTGTTCAGGCCCTACCAGCCGCTGGGGAACCCTCTGAGCAAGAGAGCCTGTCTCAACGGCTTCCACTCCCACTTCCTGTTGGTAGACGACGGCACGCTGGGAAAACATGGCTGCCAACAAGGCCTCCGGAGGAAGCTGGAGAAACACATCCAGCTGCAGAAGATACACCCTCGGCTGAACCAGGGAGtgcctgtggtgtgtgtggttctgGAGGGCGGCCCGGCCATTGTGTCCACCGTGCTGGACTACGTCAGCAACAAGCCCCCCGTGCCGGTGTTTGTGTTCGAGGGATCGGGCCGAGCTGCCGACCTGCTCGCCTTCTTACACAAGCAGACTGCTGTGGACAGGCAGCTGGACGCAGACATTAAAGAGGACTTCGTGGTCCGGATCGGAGACGTGTTTGGTGTGGAGACGGCAGAAGCCTCCCAGCTGTGCAGCCTCCTGCTCCAGTGTATGGACCACAGACAGGCTATTACTATCTTTGACTCTGAGTCGGAGGACCAAACAGCCCCTGATGCAGCCATTCTGACAACTAGTCTCAAggGCACCAAGGCCAGTCCTGCCGAGCAGCTGAGCATGGCGCTGGCGTGGGACAGGGCGGACATCGCACAGAAAGACGTCCTGGTGTACGGACAGCACTGGCAGGTGGGCTCCCTGGAGCAGGCCATGCTGGATGCTCTGGTGATGGACCGAGTCAGTTTTGTGAAACTGCTGATCGACAACGGCATGACGATGAGCCGCTTCCTCACGGTGGAGCGCCTCGAGGAACTCTACAACACGCCGCAGGGCCAGACAGACTGCTTCCTGCACCAGCTGGTTGAAGATGCCAAACAGacctcTCTTCCCATAGGCTACCGTTTCTCTCTCATTGACATGGGTCAGGTGATAGAGTATCTGATTGGAGGAGCCTACCGCAGCACCTACACACGGAAACCCTTCCGAGCCGCCCACAGCCGCCTGCACGACAAAGAGGACAGACGAGACAGTTCCGTCTCCTTTTCTAAACGGAGACACGGATTGGTACCGGTGTCCTCGAGGAGCCGGAGTCTCCAGGATCTGCATTTCTTCAGGACGGCTCAGCCGTACAAACTCAAGGATCAGGATGTGTCTCCGGGGAGCAGTCGGGACGCCACGGCGAGCTCCGGCCTTGGCGGCGTGCCGCTCCTGGTTCCCTTTAACTTCAACGACCTGTTCGTGTGGGCCGTGCTGCACCAGCGCCAGCAGATGGCGCTGTTCCTGTGGCAGCACGGCGAGGAAGCCCTGGCGCGCGCTACGGTGGCCTGCAAGCTCTACCGCTCCATGGCCTTCGAGGCGCGGCAGAGCAGCATGGACGACAACATCTCAGACCGGTTCAGGACCTATTCTCTGGAGTTTGGCCAGCTGGCGGTGGACGTCTTGGACCGAGCGTTTCGGCAGAACGAGCAGATGGCGATGAAGCTGCTGACGTCAGAGATGGAGGCGTGGAGCCGCTTCACGTGTCTGCAGATGGCCGTTTCCTCCAGTCACCGACCGTTCGTCTCGCACTCCTGCACGCAGACGCTGCTCACAGATCTCTGGACCGGCTCGCTCAAcatgaggaaaaactccttCCTCAAGATCATTCTGAGCCTGCTTCTGCCCCCTGCCATCCTGCTGCTGGAGTTTAAAAGTAAAGCGGAAATGTGCCATGTGCCGCAGTCCCATGAGGCCATGCTGTTCGGTCTCGAGTCTGTGAAGTCACCGCCCGTCCTCGATGGAACCAATCACGTGGGCAGGCAGGATGCGGAGCGAGGCCGTGACGAATGTTTTGGCCCCGTGTCTGAGACCGTGTCGTCTTTCAGCGTGCGGTATCTGTCGTGGATCACCCGTCTCTACGAGTTCTACACAGCTCCCGTTGTCAAGTTCTGGTTTCACACAATGTCGTACCTGGCCTTCCTGATGTTGTTCTCCTACGTGGTTCTGGTGAAGATGGGGGATCGGCCCAGTGTTGAGGAGTGGGTCGTCATAGCCTACATCCTGTCCACTGCCGTGGAGAAAACCAGAGAGGTGCTGATGTCCGAGCCGAGGAAGCTGAGCCAGAAGCTGAAGATCTGGTTCTCGGAGTACTGGAACGTCTCTGACTTCGTGGCCATCCTGCTGTTCCTGGCTGGATTGGTGCTGCGTTGGCACGAGGACCCGTACCGTACGGCGGGACGCATCAGCTACTGTCTGGACATCATCTTCTGGTTCGTCAGGGTGACAGACCTGCTGGCCGTCAACCAGCATGCCGGGCCCTATCTCACCATGATCACCAGGATGACCAGTAACATGTTCTTCATCGTGGTGATGATGGCGATCGTGCTGCTGAGTTTCGGGGTGTCCAGGAAGGCCATCCTGTCCCCCGACGAGGAGCCGTCCTGGAGCCTGGCTCGGGACGTGGTCTTCCAGCCCTACTGGATGATCTACGGAGAGGTGTACGCCGGCGAGATAGACCcaTGTGAGGATGGTAACTCGTGCCCCCCCTACTCCTTCCTCACGGCGTTCCTCCAGGCAGTCTACTTGTTCTTCCAGTACATCATCATGGTCAACATCCTCATCGCTTTCTTCAACAACATCTACTTTGACATGGCCTCGACGTCCAATAAGCTGTGGAAGTACAACCGGTACCGCTACATCATGACCTATCAGGACCGGCCCtggctgcccccccccctcatcCTCCTCAGTCACATGACCTTCCAATACCACAGGAAGTTCCACGGAGACGCCGAGGGAGGAGAGCCCCGCCCTCGGGACTCTGTGAAGCTGAACCTGGGCCTCGAGGACCGTAAGAAGCTCCACGAGTTCGAGGAGAAATGTGTGCAGGCCTACATCAACGAGAAGAGTGAAGGTGTCCACAGCAGCCAGATCAACAGGATCAGGAACACAGCCGAGAG

Function

NR:

description
PREDICTED: transient receptor potential cation channel subfamily M member 6-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU91230 False 518 TUCP 0.53 4 40944533 40949978
TU91231 False 375 TUCP 0.51 2 40949520 40949978
XM_039802428.1 True 3837 mRNA 0.58 25 40891729 40946809

Neighbor

gene id symbol gene type direction distance location
wu:fa19b12 NA coding upstream 8170 40878899 ~ 40883559 (+)
carnmt1 carnmt1 coding upstream 21754 40849730 ~ 40869975 (+)
LOC120560177 NA coding upstream 57184 40820609 ~ 40834545 (+)
tmc2b tmc1,LOC103356627 coding upstream 113684 40737947 ~ 40778045 (+)
tmc1 LOC104961758,LOC103356604,LOC106904573,LOC103470573 coding upstream 162908 40698916 ~ 40728821 (+)
rorb rorb coding downstream 66675 41016653 ~ 41070906 (+)
LOC120560189 LOC104961756,LOC103367624,LOC102788780 coding downstream 272724 41222702 ~ 41254622 (+)
lsm1 lsm1,LOC103396910,LOC103398031 coding downstream 648249 41598227 ~ 41605767 (+)
LOC120560217 NA coding downstream 659954 41609932 ~ 41619652 (+)
LOC120560213 NA coding downstream 680758 41630736 ~ 41635889 (+)
G68299 NA non-coding upstream 22737 40868430 ~ 40868992 (+)
G68280 NA non-coding upstream 40501 40801118 ~ 40851228 (+)
G68289 NA non-coding upstream 105778 40785552 ~ 40785951 (+)
G68252 NA non-coding upstream 146708 40744324 ~ 40745021 (+)
G68251 NA non-coding upstream 165916 40725320 ~ 40725813 (+)
G68281 NA non-coding downstream 220 40950198 ~ 40950589 (+)
G68323 NA non-coding downstream 86136 41036114 ~ 41043825 (+)
G68324 NA non-coding downstream 89604 41039582 ~ 41043179 (+)
G68325 NA non-coding downstream 91389 41041367 ~ 41041937 (+)
G68332 LOC102301842,LOC102206335,LOC101474785 non-coding downstream 182205 41132183 ~ 41141445 (+)
tmem230b tmem230,LOC101174675,LOC101077900,LOC105939206,LOC103146401,LOC102236919,LOC103356612,LOC107086812,LOC103399110,LOC103397697 other upstream 493606 40379395 ~ 40398123 (+)
G68173 NA other upstream 657138 40233473 ~ 40234591 (+)
vps33a vps33a other upstream 727304 40133766 ~ 40164425 (+)
LOC120560010 sds other upstream 1013233 39862463 ~ 39878496 (+)
G68023 NA other upstream 1430251 39410222 ~ 39461478 (+)
G68309 NA other downstream 33846 40983824 ~ 41070649 (+)
LOC120561096 NA other downstream 131629 41081607 ~ 41097796 (+)
anxa1a anxa1,LOC103133394,LOC103146482 other downstream 185799 41135777 ~ 41270849 (+)
LOC120561097 LOC106674743,LOC106674997,LOC102290162 other downstream 316669 41266647 ~ 41267519 (+)
G68349 NA other downstream 416606 41366584 ~ 41404814 (+)

Expression


Co-expression Network