RNA id: TU91231


Basic Information

Item Value
RNA id TU91231
length 375
RNA type TUCP
GC content 0.51
exon number 2
gene id trpm6
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 40891729 ~ 40949978 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aggtttttgttggtcaatggagcgatcacttcccgctgcctcaagatagcaatactcccagaatgcacctgaacacacctccctgtaagaccagcacacccagaatgcacctgaacacacctccctgtaagaccagcacacccagaatgcaccagaacacacctccctgtaagaccagcatgcccagaatgcacctgaacacacctccctgtaagactagcacgcccagaatgcacctgaacacacctccctgtaagaccagcacgcccagaatgcacctgaacacacctccctgtaagaccagcaggtccatgggccacagatgtaAAAGCTGATTAATATAAAGGAATGGCATGAGTTGAATCGATGTTgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91225 lncRNA upstream 3358 40907874 ~ 40946162 (+) True G68302
TU91207 lncRNA upstream 20171 40928462 ~ 40929349 (+) True G68284
TU91192 lncRNA upstream 31601 40886649 ~ 40917919 (+) True LOC120560183
TU91226 lncRNA upstream 33868 40913379 ~ 40915652 (+) True G68303
TU91224 lncRNA upstream 43134 40905721 ~ 40906386 (+) True G68301
TU91204 lncRNA downstream 220 40950198 ~ 40950589 (+) True G68281
TU91238 lncRNA downstream 33846 40983824 ~ 41070649 (+) False G68309
TU91242 lncRNA downstream 35158 40985136 ~ 41036618 (+) False G68309
TU91258 lncRNA downstream 86136 41036114 ~ 41043825 (+) True G68323
TU91259 lncRNA downstream 89604 41039582 ~ 41043179 (+) True G68324
XM_039802428.1 mRNA upstream 2711 40891729 ~ 40946809 (+) True trpm6
XM_039802427.1 mRNA upstream 65961 40878899 ~ 40883559 (+) True wu:fa19b12
XM_039802426.1 mRNA upstream 79545 40849730 ~ 40869975 (+) True carnmt1
XM_039802425.1 mRNA upstream 114975 40820609 ~ 40834545 (+) False LOC120560177
XM_039802424.1 mRNA upstream 121715 40820611 ~ 40827805 (+) True LOC120560177
XM_039802430.1 mRNA downstream 66675 41016653 ~ 41070906 (+) False rorb
XM_039802429.1 mRNA downstream 104773 41054751 ~ 41070906 (+) True rorb
XM_039804052.1 mRNA downstream 131629 41081607 ~ 41097796 (+) True LOC120561096
XM_039802431.1 mRNA downstream 243245 41193223 ~ 41214870 (+) False anxa1a
XM_039802432.1 mRNA downstream 272724 41222702 ~ 41254622 (+) True LOC120560189
TU91208 other upstream 52412 40867247 ~ 40897108 (+) True G68285
TU91093 other upstream 567070 40379417 ~ 40382450 (+) False tmem230b
TU91064 other upstream 714929 40233473 ~ 40234591 (+) True G68173
TU91053 other upstream 798843 40144759 ~ 40150677 (+) False vps33a
TU91051 other upstream 807038 40133792 ~ 40142482 (+) False vps33a
TU91239 other downstream 75021 41024999 ~ 41038738 (+) True G68309
TU91293 other downstream 243280 41193258 ~ 41207379 (+) False anxa1a
TU91271 other downstream 257806 41207784 ~ 41262350 (+) True anxa1a
TU91275 other downstream 257806 41207784 ~ 41262350 (+) False anxa1a
TU91276 other downstream 257806 41207784 ~ 41262350 (+) False anxa1a

Expression Profile