RNA id: XM_039804052.1


Basic Information

Item Value
RNA id XM_039804052.1
length 1236
RNA type mRNA
GC content 0.55
exon number 8
gene id LOC120561096
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 41081607 ~ 41097796 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGCTGCCAGCAATCCAGCAGATCCAACCTGAGGACAGCACATGTGAGGatcagagcagagagcagacagaCGGGAAGACGGACGCAGAGAGACCCTCCACCTGGACATGGACCacctgatgctgctgctgctgctgtggagcTCAGGACTCCAGGCTGAAGGAGATCTCACCTCAACAgAGTCTGTCAGGTTGGTGGGAGGAGCCAGTCGCTGTGGAGGATCACTGGAGGTGAAACATGAAGGAGAATGGGGATCAGTGGATGGCTATGACAGGACCCTGAAGATAGCAGCAGACTCTGTCAGGCTGGTGAATGAGACCAGTCTGTGCTCAGGCAGACTGGAGGTGAAGACTGACCAGTCTACCCAGCGctggtcctcagtgtgtgaagatGACTTTGACCAGCAGGATGCAGAGGTGGTCTGTAGGGAGCTTGGCTGTGGGGCTCCTTCAGTCCTCCAGGGGGGCTCTTATGGAGAAGTGGAGCCTCCAATGAGGACCAAAGAGTTCCAGTGTGGAGGCCATGAGTCTGCTCTCCTGGACTGTAGAAGCTCAGGCTCAGATAGAAACACCTGCTCACCTGGAAAAGCTGTTGgactcacctgctcagAGCCTGATGCTGTCAGGTTGGTGGGAGGAGACAGTCGCTGTGCAGGAACACTGGAGGTAAAAACTAAAGGAGAATGGAGACCAGTAGATGGCCTTTATTATGACTGGACCCTGAAGATATCTGGCTGGACCCTGAAGACAGCATCTGCTGCCTGCAGAGAGTTAGACTGTGGCTCTGCTGTTTCTGTAGTAAAGAGAAATGAGTCCTCACGCAGATCTGTGTGGTGGATCAGGCCTGACTGTGTTGAGTCTGGATCTGTTCTGAGGGAGTGTGCAGAATCAAGTtcctcttccttcttccttAATCTCATCTGCTCAGACTCTGTCAGGCTGGTGAATGGGACCAGTCGGTGCTCAGGCAGACTGGAGGTGAAGACTAACCAGTCTACCCAGCGctggtcctcagtgtgtgaagatGACTTTGACCAGCAGGATGCAGAGGTGGTCTGTAGGGAGCTTGGCTGTGGGGCTCCTTCAGTCCTCCAGGGGGGTCTTGGGAGAAGTGGAGCCTCCAATGAGGACCAAAAGAGTTCCACTGTGGAGGCCATGAGTCTGCTCTCCTGGACTTGCCTGATGCTGTCAGGTTGGTGGGAGGAGCCAGTCGCTGTGCAGGAACACTGGAGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91238 lncRNA upstream 10958 40983824 ~ 41070649 (+) False G68309
TU91237 lncRNA upstream 10958 41061839 ~ 41070649 (+) False G68309
TU91258 lncRNA upstream 37782 41036114 ~ 41043825 (+) True G68323
TU91259 lncRNA upstream 38428 41039582 ~ 41043179 (+) True G68324
TU91260 lncRNA upstream 39670 41041367 ~ 41041937 (+) True G68325
TU91269 lncRNA downstream 34387 41132183 ~ 41132543 (+) False G68332
TU91270 lncRNA downstream 34387 41132183 ~ 41141445 (+) True G68332
TU91284 lncRNA downstream 37981 41135777 ~ 41270849 (+) False anxa1a
TU91285 lncRNA downstream 37981 41135777 ~ 41270849 (+) False anxa1a
TU91286 lncRNA downstream 81929 41179725 ~ 41270849 (+) False anxa1a
XM_039802430.1 mRNA upstream 10701 41016653 ~ 41070906 (+) False rorb
XM_039802429.1 mRNA upstream 10701 41054751 ~ 41070906 (+) True rorb
XM_039802428.1 mRNA upstream 134798 40891729 ~ 40946809 (+) True trpm6
XM_039802427.1 mRNA upstream 198048 40878899 ~ 40883559 (+) True wu:fa19b12
XM_039802426.1 mRNA upstream 211632 40849730 ~ 40869975 (+) True carnmt1
XM_039802431.1 mRNA downstream 95427 41193223 ~ 41214870 (+) False anxa1a
XM_039802432.1 mRNA downstream 124906 41222702 ~ 41254622 (+) True LOC120560189
XM_039804053.1 mRNA downstream 168851 41266647 ~ 41267519 (+) True LOC120561097
XM_039802520.1 mRNA downstream 500431 41598227 ~ 41605767 (+) True lsm1
XM_039802490.1 mRNA downstream 512136 41609932 ~ 41619652 (+) True LOC120560217
TU91239 other upstream 42869 41024999 ~ 41038738 (+) True G68309
TU91230 other upstream 131629 40944533 ~ 40949978 (+) False trpm6
TU91231 other upstream 131629 40949520 ~ 40949978 (+) False trpm6
TU91208 other upstream 184499 40867247 ~ 40897108 (+) True G68285
TU91093 other upstream 699157 40379417 ~ 40382450 (+) False tmem230b
TU91293 other downstream 95462 41193258 ~ 41207379 (+) False anxa1a
TU91271 other downstream 109988 41207784 ~ 41262350 (+) True anxa1a
TU91275 other downstream 109988 41207784 ~ 41262350 (+) False anxa1a
TU91276 other downstream 109988 41207784 ~ 41262350 (+) False anxa1a
TU91277 other downstream 109988 41207784 ~ 41262350 (+) False anxa1a

Expression Profile