wu:fa19b12


Basic Information

Item Value
gene id wu:fa19b12
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 40878899 ~ 40883559 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802427.1
GCCTCGCAATAATTGTACGTCCGGTGGTCATGTTGTGCGACTGAAGCTGCTGCTGCCGAGCACAACATCGTGAGTAAAAAccactgacatatataaaaacgcAGCTAGTTTGATACCAAAGTGCCTCGTGTTCCCGGGTTACTCGCGCGCTTCCACACATGGCGAAGAGACGAGCAGCTGAGGACTCTCTGCTGCACGAGCCTCCCTCTAAAAGCTGCTTCCGGCCCCTCAGCAGTGTGGAGCGGCTGCTGGACAGCATGGCTCCGGCGGCCGGGGGTTTGAGCCCGCCGTCCCTGCAGGCTCTGGTGGGCGGCCGCTGCAGGAAGAGGCCGCACGGGCACTACCTGGAAGACCCACAGAAACCAGAGGAAACGGACACAACTGTGCCTCCCGACACCGGGAAACacgcagcagcagcggcagcagcttTGACTTCTTCTGGAAGGATCCAGGACCGTCGCGGCTCCAGCGCGCTCACGAGCTCCAAGAAGCGTCCGCGAGACGACAGCGCGGGTCCAGAGACGGCCGTCCCGGTTCTTCCCAAAGCTGCTGCGGACAAAGCGGATGAAGCCCCCGACGCTGAAGACTGCTCTTTCAACTCGTTCCAGTACTGGAGGGTCCCCCTGGCGGCGCCGGACCTCTCCCTGCTGGACGAAGACGCCACCGGCTGTCCCCGAAGCAAAGACGAGTCAAAGGCCAAAGACGCTTGCTGCTCTGACGCCATGGAAACCTGAAGCTGATGGGTGAAGCGAGCGTGCTCTACTCTCTCCGTACATCAGCAGTCACacgtgatgatgatgatgatgatgatgagatatGTGATGCGTCTCAGCAGATAGAAGCGACACGTTCAGGGTTGTTAGGAAAGCGTCCAGGCGAGATGCAACAACCACACGTCGCAGACTGTGTGAGCCCGGTGCAGCTGCTCCGTTATGGGAAATTAATATCGCAATCCCCATTATTTAGGTCAATATTGACATCCGGGTTATTAaccactaggggtgggaatccccagaggcctcacgatacgatatcagcCCGATACTTGTCTCACGATACCATAttattgcagaatattgcaatgtattacctttttttttcccaattttgAAATGATGTCcacaaaaggaaactttgtcaacatctgttttattgaAAAAGAtaca

Function

NR:

description
PREDICTED: uncharacterized protein C9orf40 homolog

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0043570 maintenance of DNA repeat elements biological_process
GO:0051276 chromosome organization biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0099513 polymeric cytoskeletal fiber cellular_component

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03430 Mismatch repair
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802427.1 True 1166 mRNA 0.55 2 40878899 40883559

Neighbor

gene id symbol gene type direction distance location
carnmt1 carnmt1 coding upstream 8924 40849730 ~ 40869975 (+)
LOC120560177 NA coding upstream 44354 40820609 ~ 40834545 (+)
tmc2b tmc1,LOC103356627 coding upstream 100854 40737947 ~ 40778045 (+)
tmc1 LOC104961758,LOC103356604,LOC106904573,LOC103470573 coding upstream 150078 40698916 ~ 40728821 (+)
es1 LOC102195758,LOC101474177,LOC100709427,LOC104961732 coding upstream 185840 40684239 ~ 40693059 (+)
rorb rorb coding downstream 133094 41016653 ~ 41070906 (+)
LOC120560189 LOC104961756,LOC103367624,LOC102788780 coding downstream 339143 41222702 ~ 41254622 (+)
lsm1 lsm1,LOC103396910,LOC103398031 coding downstream 714668 41598227 ~ 41605767 (+)
LOC120560217 NA coding downstream 726373 41609932 ~ 41619652 (+)
LOC120560213 NA coding downstream 747177 41630736 ~ 41635889 (+)
G68299 NA non-coding upstream 9907 40868430 ~ 40868992 (+)
G68280 NA non-coding upstream 27671 40801118 ~ 40851228 (+)
G68289 NA non-coding upstream 92948 40785552 ~ 40785951 (+)
G68252 NA non-coding upstream 133878 40744324 ~ 40745021 (+)
G68251 NA non-coding upstream 153086 40725320 ~ 40725813 (+)
LOC120560183 NA non-coding downstream 3090 40886649 ~ 40917919 (+)
G68283 NA non-coding downstream 4774 40888333 ~ 40893153 (+)
G68286 NA non-coding downstream 8773 40892332 ~ 40892653 (+)
G68301 NA non-coding downstream 22162 40905721 ~ 40906386 (+)
G68302 NA non-coding downstream 24315 40907874 ~ 40946162 (+)
tmem230b tmem230,LOC101174675,LOC101077900,LOC105939206,LOC103146401,LOC102236919,LOC103356612,LOC107086812,LOC103399110,LOC103397697 other upstream 480776 40379395 ~ 40398123 (+)
G68173 NA other upstream 644308 40233473 ~ 40234591 (+)
vps33a vps33a other upstream 714474 40133766 ~ 40164425 (+)
LOC120560010 sds other upstream 1000403 39862463 ~ 39878496 (+)
G68023 NA other upstream 1417421 39410222 ~ 39461478 (+)
trpm6 NA other downstream 8170 40891729 ~ 40949978 (+)
G68309 NA other downstream 100265 40983824 ~ 41070649 (+)
LOC120561096 NA other downstream 198048 41081607 ~ 41097796 (+)
anxa1a anxa1,LOC103133394,LOC103146482 other downstream 252218 41135777 ~ 41270849 (+)
LOC120561097 LOC106674743,LOC106674997,LOC102290162 other downstream 383088 41266647 ~ 41267519 (+)

Expression


Co-expression Network